abcf3 (abcf3)


Basic Information

Item Value
gene id abcf3
gene name abcf3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8016413 ~ 8031250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303519.1
ACCAAATGCAGCAGGGAGACtccgcgcatgcgcactggAGTCTCAGCAGGAGCCGCGGTGTAACATGGCGACGTACGTGGACATTCTGAAGAGCGAGTTTCCCGAAATTGACACTGAAGTGTTTGATTATATTACTGGAGTGCTGGACAGCGGAGGCTCAGATTTTGAGGATGGAGCAGAAGTGTTCGACGCCATTGGTGGAGTTCTACAGGAAGTAGCAGCTGAGAAAAATGAAGATGACGTCCGAGACATCTGCCTGCAGCTGTTTAACACGCTGAAGATcaATAACTGTCACTCTAACCAGAGGCAGGTGCTGCTGGATGCTCCTGTGCAGCTCTCTCAGATCTCTGCAGAGACGGAATCGGCTGTTAATGATGTGCAGGGCATTTGGATGGTGAAGAGAACCCAGGGCACGACTGTGGATGCGAAGAAGTTAGAAAAAGCAGAGGCCAAGCTGAGAGCTAAGCACGAGCGGAGGAATGAAAAAGACTTGCAGAAACCCTCAAACCCGCTGGTGCTGGAGGAGGCCTCGGCCAGCCAGGCTAGCAGTAAGAAGGAGAGCCGTGTGGACATGTCGGGGAAGAATCGCAGCTACGACATCCGGATCGAGAACTTCGACGTGTCGTTTGGAGAGAGGTCTCTGCTGCAGGGAGCCGAGCTGTGTTTGGCGAGCGGTCGCAGGTACGGTCTGATCGGGAGGAACGGCCTGGGGAAGACCACGCTGCTGAAGATGCTGGCGAGCCGCAGTCTGCGTGTCCCAGCCCACATCTCCATCCTGCACGTGGAGCAGGAGGTGGCAGGAGACGACACGCCCGCACTGCAGAGCGTGCTGGAGAGCGACACGGTCAGAGAGGAGCTGCTCGCCGAGGAGCGCTCGCTCAACGCACACATCGCCAACGGCACAGCGGAGGGGACTGAAAGCTTGCGTCTGTCAGAAATCTACGCTAAACTGGAAGAAATCGAGGCAGACAAAGCACCAGCCAGAGCTTCAGTGATCCTTGCAGGTTTAGGATTTTCCCCCAAAATGCAACAGCAACCAACCAAAGAGTTTTCTGGTGGTTGGAGAATGAGATTAGCATTAGCGCGAGCTCTGTTTGCAAGGCCTGACCTTTTGTTACTTGACGAGCCCACGAACATGTTGGACGTCCGAGCCATTCTGTGGTTAGAGAATTATTTACAGACGTGGCAGTCCACCATCCTCGTGGTGTCTCACGATCGGAACTTCCTGAACGCCGTCGCGACCGACATCATCCACCTGCACTCACAGCGTCTGGACAGTTACCGTGGCGATTACGAGAACTTCATCAAAACGAAAGAGGACCGACTGAAGAACCAGCAGCGGGAGTACGAGGCTCAGTTACAGTACAGAGAACACATACagGTGTTCATCGACAGGTTCAGGTACAACGCCAACAGAGCTGCACAGGTGCAGAGCAAGCTGAAGCTTTTAGAGAAACTCCCTGAACTTAAGCCTATAGAAAAGGAGTCCGAAGTCATTTTACGATTTCCAGATAATTTCGAGAAGCTGTCTCCTCCCATCCTGCAGTTAGACGAGGTGGAGTTTTACTACACGCCCCAGCAGCAGCTGTTCACCGGCCTCTGCGTCTCCGCTGATCTCGACTCCCGGATCTGCATTGTAGGTGAGAACGGAGCGGGTAAGTCCACGTTACTGAAGCTGCTGATGGGAGACCTCACACCCGTAAGCGGCACCAGACACGCCCACAGAAACTTGAAGATTGGTTATTTCAGTCAGCACCATGTAGACCAGCTGGACCTCAACGTCTGTTCAGTGGAGCTGCTTCTCAGCAAGTTTCCTGgTCGGACCGAGGAGGAATACAGGCGTCAGCTGGGGAGGTACGGGATTAGTGGAGAGCTGGCGACGCGGCCCGTGGCGAGTCTTTCAGGAGGACAGAAGAGCCGTGTAGCGTTTGCTCAGATGACCATGCCGTGTCCCAACTTCTACATCCTTGATGAGCCGACCAATCACCTGGACATGGAAACCATTGAAGCCCTTGCAAAGTCGTTAAATACGTTCAAGGGTGGCGTTGTGCTGGTCTCGCACGACGAGCGCCTCATCCGGCTAGTGTGTAAGGAGCTGTGGGTGTGCGAGGCGGGACGAGTGCATCGCATCGACGGCGGCTTCGACGAGTACAAGAGCATCCTGCAGGAGCAGTTTCAGAAAGAAGGCTACCTGTGAAGCACCTCACTCCATCGACACGCACACCGTTTAAACTGACGGCATCACCATGACCCCAACACGCTCATTGACTCTGTGTACAAAGTGAACTCCAGCGTACAGTCGCCCTGAGCCAGCTTCCTGGAAGCTGAACCAGAACTGATACTGAATTGGTTCCCATTCCAGTCAGCCCATTTTCCCAGCTTTCTGAAATCATGGCATCGCTGCTTGCTGCTGTGGCTCACGCTGCGTCCTTTACCGGTCATGTGACATGAGGGCAGGCTGAGGATGTACCCGCTAGGGTTCTCTGCACGGGTTCATCTTATTTctgtacctaaaaaaaaaaaaaaaacaagcctgaCGCAATAAATGTAAAGTGAGGTGGACGTGTGCCATTTATGTTGTTTGGATGCGGCTGTTGTCGTTAACTTATCAACATCAGTTTTAGAACACGCTAATAAAAACCTAACGTTCAATCA

Function

symbol description
abcf3 Predicted to enable ATP binding activity. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3).

NR:

description
PREDICTED: ATP-binding cassette sub-family F member 3

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303519.1 True 2655 mRNA 0.53 22 8016413 8031250

Neighbor

gene id symbol gene type direction distance location
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding upstream 1894 8011970 ~ 8014519 (+)
cacna1eb LOC108267309 coding upstream 7973 7937514 ~ 8008440 (+)
LOC113526772 ttc39c coding upstream 205845 7790827 ~ 7810568 (+)
LOC113526636 osbpl1a coding upstream 230237 7743431 ~ 7786176 (+)
LOC113526517 znf521 coding upstream 340989 7543681 ~ 7675424 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 2811 8034061 ~ 8053897 (+)
LOC113526329 LOC108267642,LOC108436873 coding downstream 53896 8085146 ~ 8101065 (+)
znf830 NA coding downstream 71155 8102405 ~ 8104017 (+)
LOC113526595 LOC108267854,LOC108436868 coding downstream 199930 8231180 ~ 8356530 (+)
arhgef11 arhgef11 coding downstream 434055 8465305 ~ 8504653 (+)
G60931 NA non-coding upstream 229778 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 314315 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 349194 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 406223 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 530262 7485766 ~ 7486151 (+)
G61096 NA non-coding downstream 78228 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 86458 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 186844 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 260678 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 264121 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1312067 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1419812 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1872611 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2420188 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2624584 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 24806 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 664102 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 693295 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 863220 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1727210 9758460 ~ 9774049 (+)

Expression


Co-expression Network