LOC117597035


Basic Information

Item Value
gene id LOC117597035
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28901530 ~ 28906396 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303522.1
agaaaaataaacacatccaAACAAGTCTTTaagtttattctgtttaattcaatgaagaggagagaaaaaaacatcatcatcatcatcatcatcatcacggaTTTAGAACGTAAAGCTGTAAGAGATGGGGGACTGTGACGTCACAAGAGGAGGCTTTGGCGTCACAGGAGGAGAAGGGACAAAAAATTTCAGGTGCTTTAGTTCAGTTACTGCATTTTACAGATCACATGCCAGagAAAGCAATCCGAGAGAAAACACTGAATTCATACCCACGTGATTCAAAGATGAGTAAGAAGAAGAGAAGTAGCCAGAGAAGAACAGCTGGAGCGTGCACTCGGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGAGGAagaATGGAAGGCTGTGACCAGGGACATGACGAAGAAGGTCACAAAGTTGGAGTTTGTGGCTCTGTGCACGAAAATCGTGATGTCAGCGGCGTCTTCTGCCATTCGGCGTTTACTGACGCCTCTCATGGAAAGCTTCGGGATCGATTCGATTCTCCAGGCAAACGACAAGCTGAAGAAAATGCCTGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACACCTCAGCTCAAAGATCACCTATGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAGTCGTCACTCAGACAACAGCTGCGATGCTGGAGGCGATCCGGAGAGTGGCATCAGGACGGAGGACGATCTGCTCGGCGAGAGCTTCATCACCTGTAGAAGATCAGATCTCACAGCCAGATCTCAGCATCGCATGCACTAATGAGATCTGTGATAAGATCTTGGCTCTGTGTTACTCTGGTGATTTCGACAGCCCTGGAGGAGAGAAAACTTCAGCAGCGTCGCTAAAGTCCCACCAGGAGGTCCAGGGAATAATGAAGGGCTTGGAAGAAGTTGTCTCCACCAGCAGGTCCCCTTTTGAGTTAACTCTAAAATCCTCGACCCCTGATTCGGTCCCTGTGACGACTAAAGTGATGGCTCCTGATTGTGCTGAGAGGCTTTTCAGTGATCAGTTTCTGAGCAAAGCCACACAAGCAGTCAGAAAAGTTCTTctgaaaacagaggaaaaaatcGCTGCTGCAATGTCGTCCCAAACCTCCGTCCCTGTCCGCAGTGAGACGGAAATGAATTCGCTGACGGAGGAGGTCAAGAGAACAGCCTCAAAAATTCTGTGGGAATTAGTTTTTATACTTACACAGTCACTGTGTAAAAGTTCATCAGGCGTCAGTTGCAATGCTGCTGACCAGTCTGGACCAGAAGTTGAGAGGAAGAACTTCCTCTCTGGTGCTCGAAAGATCTACGAGAACATCTTCAAGCAGGTGTTTGAGTTCACCTCTGGGCGGAAGCAAGCCATTTCCGAAAAAAACAAGTCGTTCTTGGACGTCTGTCCTAAAACTGCTGCCGAGCTCGAGGGCAGGTCGGAGAACGTCCAGGAGTCTGCTGCTGCTGAACGTTACCTCGATAAAGCCATTCTGGTTGCGAGTGAGATCCTAGAGAAGTGGTTATCTTCAAAAATTTCCACAGGTTTATTCAGCGGGAAAGATTCGGGTTCCAGCACAGAGTCGTCACCGACGGCGTCAGTAGATCTGGATCGAGTCACTGCTGAAATCGTAAATACGGTGATCAGCGGAATGGCTCTCGAGATCGGAACAACTGACATGGAAAACGGATCGGATGCTCAAGTAGGTGAAGCTCAGGTGAGTGATGCTGATGCTCGCCCAGCTCCCTACTCGGAGAAATCCTCAGATGTTATCACAAAGCACCGAAGTCTTGCTGGattcagagagaaaaagagaccgTCGTGCTCGAGCCTGGAGaacgcagcagcagcagcagcagcagcagtgactgATGCTCAGAGCCTCGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTGCACTGAGGAGCTGATTGAAAAGAACGCAGATTTATTACTGCGTGACAAGCTGCCGGCCAAGTCCCGCTCTTCTAAAGTACCTTGGTTCAGACGGTTTGCGTTCTTGCAGCCGCGTAAATCCGGTCGTCTGAGGTCTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAAGGAGTTCCTCAATAAAGCCACTCAGATGGTgagtgaaatgctgctcagaaGGCTGTCGACAGCAGATTCCTCGAGATGCTCGTCAGAAGATGAGCAGAGTGCCGTTAGTACTGCAGATTCGCTCGTCAGCGTTTTATACGAATGCGATGAGTCTGTGAAAGACGAGACTAAGAGCTCTGACGCTCTCGAAGCCTTTTCCTGCCTCTTTGATGTCAGAGAAGCAGAATCTGCCAAAAAGCCACAGAACATCTTGAGAAAAGTGCGAAGTCTCCTTCAGGCGTTTTTCTCAAAGGCATCTAAAGCTCTGAGCTCTCCCACACACGAGGAAAGGGTGGAGGAGCAGGTGGACCTGGACCTGTGCACCAACAGCGTCATTACTGAGGTCACTGATTTGTTAAGGAGTGAGCTGACAGCTCCTCCTACAGTGAAGAACGATGACGCCCATTTCCAGACCGAATCCACCAGGCGTGTGAGTGACCTAATCTTCCGAATGGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGTCTCATGAAAGTGTCGTCAGCGTTAAATCTGCAGATCCTTTCTACTGAGATTTCCCAAACTGTTAGCGCCACTGTGCGGCAGTTTATAGATGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAACAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAATCAGCTGAAGGCTTTCTTCACTTCCTTCTCTAAACATGTTGCTGACGATGAAAGGACAGATGCGTCAGCGCAGTCAGACGGGGATGAGGATCGTGTCACTCCCATCTACATCAGTGAGGATGGCACGGTTCATGAGCTAACAGAGATGGAGGATCTTTCTCCAAAGGAGATGATCCATCGACGAGCATGTGCTACAAAGGATGTAATTCCAAAACTCCCCTTAAGGGACGTGGATAGGGCAGATGTTGGCCAGTGTTCATCGGATTCTGTTCCAGGGAGAGAGAACAACATGTTACGCTCCATCCAGTTACCTTCCGAGTGCGTTTACATGTTTGCAGAGGAGTCCATCAAGGCTTTACTGAAGAATGTGCTAAACGCCGGGCCGAGTGCAGGAAACGAAGCACAGGAAAGCAGCTTCATGGACAAATCAACGGGTTGTCCGTTTGCTACAGTGCTCGCACATGAAATCGAGGATGCTGGGACTTCCTCTAAGTCTCCTCAGCTATCAGCAGCTCCCTCTTCACACACAGAATCGAGGGCCTCGGGGCGGTTCTTCAGGAGCGCTCGCAGAATGCTTGGCCGGATCTTCTCCCCCATCTGCAATTTCTTCGACAGACACCCCAActttaaagctgtgtgttttggtgtgttaATGGGTTCTATTGCGTGTTTTTGTGTGGGTGTGCTTGTGTTTACTTCGGTGTTACTGTTTacataataaacacatgtaatgtactgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303522.1 True 3586 mRNA 0.49 7 28901530 28906396

Neighbor

gene id symbol gene type direction distance location
LOC117597120 NA coding upstream 13974 28885151 ~ 28887556 (+)
LOC117597034 NA coding upstream 33352 28863057 ~ 28868178 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding upstream 58768 28832373 ~ 28842762 (+)
LOC113540201 LOC108267859 coding upstream 69802 28827952 ~ 28831728 (+)
zgc:153615 zgc:153615,LOC108267208,LOC108430722,LOC103026425,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC105899149 coding upstream 78028 28814083 ~ 28823502 (+)
cope cope,LOC107709006,LOC107681743 coding downstream 17215 28923611 ~ 28930532 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding downstream 34278 28940674 ~ 29042995 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding downstream 173788 29080184 ~ 29128564 (+)
miga1 miga1 coding downstream 266360 29172756 ~ 29184256 (+)
LOC113540202 LOC108267626,LOC108437507 coding downstream 290193 29196589 ~ 29205743 (+)
G72869 NA non-coding upstream 269 28862416 ~ 28901261 (+)
G72872 NA non-coding upstream 27542 28873603 ~ 28873988 (+)
G72472 NA non-coding upstream 109694 28787617 ~ 28791836 (+)
G72428 NA non-coding upstream 242994 28658276 ~ 28658536 (+)
G72422 NA non-coding upstream 249909 28651414 ~ 28651621 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding downstream 8233 28914629 ~ 28915258 (+)
G72892 NA non-coding downstream 11346 28917742 ~ 28918398 (+)
G72910 NA non-coding downstream 24680 28931076 ~ 28931398 (+)
G72913 NA non-coding downstream 27587 28933983 ~ 28934309 (+)
G72917 NA non-coding downstream 147090 29053486 ~ 29054218 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 104371 28792847 ~ 28797159 (+)
gng5 NA other upstream 140079 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 518108 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 563357 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1495132 27384807 ~ 27406398 (+)
fubp1 fubp1 other downstream 275371 29181767 ~ 29196149 (+)
asip2b NA other downstream 713597 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 767118 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1548361 30454757 ~ 30478293 (+)
G73944 NA other downstream 1839735 30746131 ~ 30767132 (+)

Expression


Co-expression Network