LOC113540041 (dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861)


Basic Information

Item Value
gene id LOC113540041
gene name dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28911613 ~ 28918152 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303523.1
gagagggaaaaaaaccacAGGCTCAGAGTCTCAGAGCAGAGGAGAGTTGTGCTGCTGGTATTTATAGAGGCTGAATCCACAGCTCGGGAAGCCAGGAGGGGATTTTAATCAgcgtttatatttttattgtcacctcacacacacacacacacacacacacacacacacacgctcggaCAGAGGAAGAAGAACGAACCATGGGGAAAGACTACTATAAAATCCTAGGCATTTCGAAAGGAGCTGCAGAGGAGGATGTTAAAAAGGCGTACAGGAAACAGGCTCTGAAATGGCATCCGGATAAAAACAAGGCGCCCAACGCGGCGGAGAAATTCAAGGAGGTGGCCGAAGCGTATGAAGTCCTCAGCGACCCCAAAAAACGCGACATATACGACCAGTACGGAGAGGAAGGCCTGaaaggaggaggtggaggaggaggaggagcgtcCGATGGCCAGGGCAGCACCTTCACGTACACGTTCCATGGCGACCCACATGCCACCTTCGCCACCTTCTTTGGTGGCACCAACCCCTTCGAGATGTTCTTTGGACGCAAGGTGAACGGCAGAGACGATGAGGACATGGAAGTGGACACCGGTGACCCTTTTGGCTCCTTCACGAGTTTTAATCTGAACGGTTTCCCTCGTGACCGGCAGCCTCGGCGTAAGCAGGACCCGGCGATCCATCACGAACTGCGTGTCTCGCTCGAGGAGGTCTTTCACGGCTGTACCAAGCGCATGAAGATCTCACGCCGTCGCCTGAATGCTGACGGCCGCACCACACGCACTGAGGACAAGATCCTGTCCATCGAGATCAAGCGCGGCTGGAAGGAGGGCACCAAGATCACGTTCCCACGGGAGGGCGACGAGTCCCCCGGCTGCATCCCTGCCGACATCGTCTTCGTCATCAAGGACAAGCCGCACCCGCACTTCAGGAGAGAAGGGTCCGACATCGTCTACCCCGTCCGCATCAGTCTGCGCCAGTCATTGTGCGGTTGCTCGGTTACGGTCTCCACGATAGACGGGAAAACGTGCAATATGAAGATCACGGAGGTCATCAAACCGGGAATGAGGAAGATCGTAGCGGGACAGGGGCTGCCCTTCCCCAAGAACCCTGAGCAAAGAGGAGATCTCATAGTGGAGTTTGACGTGAACTTTCCGACAGTCTGCCGTCCAACGCCAAGGACGTGCTGAAACGCCATTTACCCGCTTGATGAAGGGAACGCAGCAGGACTGCGGCGGCGTTAAACGGCGCACCACACTGACGCTCGCCATCTCTCCCGATCCAACACTCGGACAAATCGCCGCTACGCCCCATAAACAATGTgcaatttctattttttatctAGTTAGTCagtgtttgtgcttttttaaaaaatatgttgcaTGCCCAAATAAGGTCATAAACGTGCAAGTGGAATCTTCATCTCTGAAAGTAAACGTCAGATTTGACTCCTTTA
>XM_034303525.1
atagagagggaaaaaaaccacAGGCTCAGAGTCTCAGAGCAGAGGAGAGTTGTGCTGCTGGTATTTATAGAGGCTGAATCCACAGCTCGGGAAGCCAGGAGGGGATTTTAATCAgcgtttatatttttattgtcacctcacacacacacacacacacacacacacacacacacgctcggaCAGAGGAAGAAGAACGAACCATGGGGAAAGACTACTATAAAATCCTAGGCATTTCGAAAGGAGCTGCAGAGGAGGATGTTAAAAAGGCGTACAGGAAACAGGCTCTGAAATGGCATCCGGATAAAAACAAGGCGCCCAACGCGGCGGAGAAATTCAAGGAGGTGGCCGAAGCGTATGAAGTCCTCAGCGACCCCAAAAAACGCGACATATACGACCAGTACGGAGAGGAAGGCCTGaaaggaggaggtggaggaggaggaggagcgtcCGATGGCCAGGGCAGCACCTTCACGTACACGTTCCATGGCGACCCACATGCCACCTTCGCCACCTTCTTTGGTGGCACCAACCCCTTCGAGATGTTCTTTGGACGCAAGGTGAACGGCAGAGACGATGAGGACATGGAAGTGGACACCGGTGACCCTTTTGGCTCCTTCACGAGTTTTAATCTGAACGGTTTCCCTCGTGACCGGCAGCCTCGGCGTAAGCAGGACCCGGCGATCCATCACGAACTGCGTGTCTCGCTCGAGGAGGTCTTTCACGGCTGTACCAAGCGCATGAAGATCTCACGCCGTCGCCTGAATGCTGACGGCCGCACCACACGCACTGAGGACAAGATCCTGTCCATCGAGATCAAGCGCGGCTGGAAGGAGGGCACCAAGATCACGTTCCCACGGGAGGGCGACGAGTCCCCCGGCTGCATCCCTGCCGACATCGTCTTCGTCATCAAGGACAAGCCGCACCCGCACTTCAGGAGAGAAGGGTCCGACATCGTCTACCCCGTCCGCATCAGTCTGCGCCAGATGTTGAGGCTCATGTTAATGGACTTTTTCTGGGACCATATTCATGGATATTGAGGATCATATTAAGAGATGTTGATGGTCAAGATCATGTTAATAAAGGTTTACAGATGTTGAGGGTCAAGTTAATAGATGTTTACAGATGTTCAGTGTTATGTTAATAGATGTTTACACATGTTGAGGATCAGGTTAGTGGATGTTTACAGATGTTGAGGGCGGGTGATGATAAAAGACGTTTATAGATGGCGTTTATATAAAATTGAGGGTCTTAACAGATGTGTACAGATGTTCAGGGTCCTGTTAATGcgtgtttatctgtttatggaTGTGGAGGGTCATATtaacagatgtttacagatGTTGAGAGTTTAGTAATGTTTacagatgactttttttttaacatgacgTTGAGGGTCACGGTGTTAAATTTTTACAGATGTCCAGTGTCATGTTAACAGCTGTTGAGAGTCATATTTCTGCTTTCAGATGTTGAGGGTTGTATTAACAGATGTTTACCCATGTTGAAGTTTATGATTGCTTTTTACAGCTGTTTACTGATCGGTTCAGATATCGAGGATTATGTTACCAgatgtttatgtatgtttgcAGATGTAAATTGATGTTTTGAGGTACAGTTAAAGTTGTTGAGATGTTGATTATGTGCATTTAGAAATGTTAACAGATGTTTACAGAAGCTGAAGATAGTGACAGATCGTCCTATGATGTTGAGAGTCGTTTAAACAGATGTTTACAGATGTTGACAGTTTTGGTGAAAAGGCCAATTCTACACAGTAGGAGTCACCTCATTATCCTGCACCTCAGCACACAATAAATATCATCCTTCATCGatctacagtattaaatataatcacCGATATatagtaagtaaggaataaaacacttggggatgtgctgttacaggaaaataatcaacaacggggtggtgtgat

Function

symbol description
dnajb4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4).

NR:

description
PREDICTED: dnaJ homolog subfamily B member 4

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303523.1 False 1456 mRNA 0.54 4 28911613 28918149
XM_034303525.1 True 1930 mRNA 0.46 4 28913679 28918152

Neighbor

gene id symbol gene type direction distance location
LOC117597036 NA coding downstream 31411 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 50170 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 83649 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 125858 28763304 ~ 28785755 (-)
arl14 LOC108267661 coding downstream 148336 28762094 ~ 28763277 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 136860 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 213034 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 382154 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 414967 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 441348 29359500 ~ 29371526 (-)
LOC117597038 NA non-coding downstream 14814 28892016 ~ 28896799 (-)
G72893 NA non-coding downstream 77893 28832384 ~ 28833720 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 127473 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 193658 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 242970 28667323 ~ 28668643 (-)
LOC113540203 NA non-coding upstream 22510 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 68320 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 125608 29043760 ~ 29043970 (-)
G73248 NA non-coding upstream 135445 29053597 ~ 29054227 (-)
G73247 NA non-coding upstream 209903 29128055 ~ 29196167 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 26648 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 119784 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 259188 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 674808 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 675346 28236186 ~ 28236267 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 230486 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 646069 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 806436 29724588 ~ 29730857 (-)
G73619 blvra other upstream 1101354 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1823375 30741527 ~ 30750968 (-)

Expression


Co-expression Network