LOC117597036


Basic Information

Item Value
gene id LOC117597036
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28877573 ~ 28880202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303526.1
GGTGAGTATAAGCCCTGttccacaacaatttgccaattattGCAGTAAAGAACATCATGCCatacattttatcagtttataattacatttaatgttgtatagaaaatgaatcaacactttatGACTAATCAGAGTCAGGACTTCTGCAGCGCTGTGGTATTAATAGATGGACatttattatagattatagtaTTTTGAACACAATGTTCCTGTAACAAATGTCAAGGACATgcaaggaggaggcgggaatTGAGTGAACTCAAACATGAACTTAACGTGAACACACAAACAAGAACCGAACGTAAAACACAAACGTAAGGCAAACATAAAACAcgcgtgcatctctctctccctcggcgtctccagccgctcctttatccctctctcccgctgattagccaactcagtgccaggtgtgcatcctcacagcctgCTTGTCACACTCCTCCGCGGGCAGATTCAGGCCTCTGGcctgacgcacacacacaaaaacaacatattGTGTTGTCTTAAGGGTCAAAAATGACCTGTGACCATTtttaacagcagaaaaaaaccctaaatgATGTTTATTCAACTTGAAATTTGATGACTTTTCCTAAAATGACCTCAACATTAGAAAAAATCAaccattttctattttcatattttcatgaaGGCTTTACACAGCTAGGGTACAAAGATTGTCTCAGGGGTCAATTTTGACCCGCCAGCTATAAAGCCATTTATACACCCCCAAAACTACAgacacatcacagacacacactggcacaaacatgcacactccaacacacacacaataagaaACTAAGATTGTGTGCTACTGattgatctctctctcatcttccCTCCATGACCCCACGCATGACTCAAGctcagacaaaataaaaagaatttcagacaaaataaacaTGTCTTGAAAGCATTATTTACTAATAGGGAATGCTTATATATAGGTTTTGTAGATTGCAGTACCGTAGTTGTCTTTTTGCCAAAGTCATGAGTGCTCGTTTCAGTGCCCAGCAAGTTGCAGATGTGATTACTTCAGGTGTCTTGGAAGAAGATAACACTGATTTGAAAGAGGAGGAGGCATCTGAAGAAGAAGATGGGGAAGAGTACAACCCAGAGAATGATTCCTCATCTTCAGATGAAGCAGAAATCCCCCAAGCTGACAAAGAAACTTTTTTGTCAAAGAACAGCAAAATATCATGGTCTTCTTTACCATATGGCAAGCAGGGCAGGATGGCAGCAGAAAATGTCATGAAGATGACCCCAGGGCCAACAAGATATGCTGTTTCCCATGCCCAGGACATGGTCTCaacatttttcatgttcattacaccaGCCATCAAAAAAATCATTGTAGAAATGACCAATCTACATGGTTTCCAGAAATGGAGACAAGTGGAAAATCGTGGATGAGACTGACCTGCGTGCCTACATAGGGCTGGAAGATGGAAGTGTACACAGGGAAGCTGATCAGTGGAGGCCCAGAGAAGAATCAGGGGATGCGGGTTGTACTTGATGTGACTGAGGGGTCTCAATGTCACGTGTGACAATTTTTTCACATCTTATGAACTTGGCCAGCAGCTGCTGAAGAGAAAGATCACCATGGTTGGCACAGTCAGAAAGAACAAGCCTGAGCTGCCCCCTGCACTACTTGCAACAAGGGGGAGAGATGCCTTCTCCTCTAAGTTTGCCTTCACCCCCACCACCACTCTAGTTTCTTACCTCCCAAAGAAGGACAAGAATGTGGTCCTCCTGAGCACACTGCACAAAACAGCAGAGATCAGTGATCGTGAAGACAAGAAGCCAGCTATCATTCTGGACTACAACCACAACAAAGGAGGTGTGGATAACTTGGACAAGGTGATTGGAACTTACTGCTGCAGGAGGATGACTGCGCGCTGGCCCTTGGTCATCTTCTATAACATCATTGATGTGTCCTCATACAATGCCTTTGTGATTTGGAGCCAGACCGACCCTGCCCGGATATCTGACATGTGGAACAAGAGGAGGGTATTCCTGGAGCACCTGGGAAAGTCACTTGTAACCACCCAAATTCAAAGAAGAGAGCGTCTCCCTCACACAGCAGCCTCTGCAGCACTTGTGGAAGCTGTTCAGGGTGCTGAATCTTCTTGTGTTCCATGTTAGGCTGCAGCAGGGGCAGGCAAGAGGAGGAGATGCCAAGTCTGTCCCCCCACAAAGGAGTGTAAAACAACCACTATGTGCTCAACgtgtaaaaaatatatctgCAAAGTCCATGCTCACACACTGTCCTACTGTCCCACATGTGCTAATTAGGTCAGCTGTTGCCAAAAGGTTGGTAGATAGTGTAGTTGTATTTATAGTCAGGCTGTTGTTATTATAGTTACTGTTTTCCTGCTTATTTCCCTTCAACAAAATGCATTCAAAACTCCTTTGTGCTGCTTTAACTTTTATGAATACTGTCTTGCTAAAAGCTTTTTACACCTATGTAGGTACCTTAAGCagtagaaaaaataaacatgtacttTAGTACAAAACAAGTGGTGCCCACTGATTAAATATTGATGAAATACTGCACACTGAGGAGGGAAAactagctgcgtttacatggacactaataatccgatcgtaattggactaga

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303526.1 True 2630 mRNA 0.43 1 28877573 28880202

Neighbor

gene id symbol gene type direction distance location
gipc2 gipc2,LOC108430720 coding downstream 16130 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 49609 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 91818 28763304 ~ 28785755 (-)
arl14 LOC108267661 coding downstream 114296 28762094 ~ 28763277 (-)
LOC113540626 rec8 coding downstream 120929 28745630 ~ 28756644 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding upstream 31411 28911613 ~ 28918152 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 174810 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 250984 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 420104 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 452917 29333119 ~ 29336703 (-)
G72893 NA non-coding downstream 43853 28832384 ~ 28833720 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 93433 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 159618 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 208930 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 405802 28397661 ~ 28471771 (-)
LOC117597038 NA non-coding upstream 11814 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 60460 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 106270 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 163558 29043760 ~ 29043970 (-)
G73248 NA non-coding upstream 173395 29053597 ~ 29054227 (-)
LOC117597168 NA other downstream 85744 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 225148 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 640768 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 641306 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 651970 28197991 ~ 28225603 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 268436 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 684019 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 844386 29724588 ~ 29730857 (-)
G73619 blvra other upstream 1139304 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1861325 30741527 ~ 30750968 (-)

Expression


Co-expression Network