LOC113539911


Basic Information

Item Value
gene id LOC113539911
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17573590 ~ 17586296 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303563.1
gttcggaaacaaccacagacgaCTCTCTTAcgaccactagtgattctggcacaacagctgagagttcggaaACTACCACAGATAACTCTCTTACAACTATGCCAGATACAACCATAACAACTAGTGACTCTGCCACAACAGCTGAGGGTTTGGAAACAACCatagacaactctcttacaaccactagtgattctcccacaacagctgagagttcggaaacaaccacagacaactcccTTACAACTACCCCAGATGCAACCGTAACAACTAGTGACTCTGCCACAACAGCTGAGGGTtgggaaacaaccacagacaactctcccacaaccactagtgattctggcacaaccgCTGAGATTTTGGAAACGActacagacaactctcttacaaccactagtcattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaACCACCACAGaaaactctcttacaaccactagtgactCTGGAACGACAGCTCAgagttcagaaacaaccacagaaaaCTCTCTTACATCCACATCAGCAGCCACAACAACAGGTGCGACACAAAAAAccactacaactacaactacaaatCCACCTATACCATGTGAAAATGGTGGAACTCCAACAGACAATGGCTGTTTCTGCGCCCCTGGTTTTATAGGAGGGTATTGCGGCAGTGTTGTATCTGAAATCAGAGGTCCAGATAAAATTGAAAGGATAGTCCTTGCTGAAGTAGACATAAACAAAACTTATATCTCTGAATACCAAAATCCGTCCTCACAACAATATAAAGATTTTGTCCAAAGCTTCATTATAAAGATGACACCATACTACAAAACCAGGATTGATAAGTTCTTGAATATAACAAATGTAACACTGAGTGAAGGAAAACCTTTCAAGAGCCGAATGCAGAGCAAGTGGATAGAGAAAGCACCTAAAAGTGTGAATGTTAAGCATGACATTGTTGTGGAAATTGAAAACTATGCTAGTGAAAAGTATGAAAAGCTCTTTGTGACCGTCCAAGAAGCTGTTAAATCACTTACAAATTGTACTCCCATGTTAAAAGCCTGCCCAAACTTTACTGTTACTGAGGTCCAGGTCAACAAAACTGTACTGACTGAAAAAGAGTTCTGTGAGCAAGTTACAGCAATGCTTCCTGAGGAGTATCGTCACTATTTTTCTCCCGTTACTGTGCTGGGCAAATTAACATGTGTCAATCAATGTCATCGTGATCATCCTTCTCCAAAGATCTGCATGAACAAAGGTACCTGTGAGGTTTCCAAGCAAGGACCAGCCTGCTACTGTCGTCACTCAGATACAAATTGGTATCTTGGAGAAGATTGCAAGTACCAAGTTCACAAAGTGGGCGTCTATGCTGGAATGGCAGTTGTCACTGTGGTTTTAGTATTAGCTGTAGCAGTGTTTTCGGCATATGTCTCGCTTAATAAAAGGAAACAGAAGAGGAATAAAGACAATAAGGAAGCTCTTGTGAATCAGTGGATAGATGATGACTTTGAGTGGCCCTCACAAAAAAGATCAAACGAATCTCATTCAGTGGTTGATGAAACATATGATAATCCTGCACAGTCAAATGAGGAGAATACCAGCCAGAATACCACACCTCATAGAACAGCCTCTTCCACCCATCCTTCTTCCCCCCAATTCAACTTGCCTCAAAATGTAATTCCACTTCAGTATCTGGGCAGCAATCACCCTATGAGAATCAGCAAGCCTCAGATCCACACCTCTTCTTCAAGGCCAGAAATATACAACTTTGATGTATGATATTTAACATcatcacacattcacaaaacTAAAAACTACTGTTAAAAATTGTTTGCCTCCACAGAGAAAAGCATTAAAATACTCTAGACAAGatgattatttttgctttttgctaCAAATTCCACAGATCATTCTAAATACTTTTATACTATTTCTTATTTACATATTGCATTTTGAGTTTTCTGATAGctaaaaataatgacatgatGACAAGACAAAAGAAGCACTTTTGCTAGAACACAAgcatgaataaaatacaaatttcatGTTTTACTTGAAAAAATCTTACAGTATATGTTTAAACTAT

Function

GO: NA

KEGG:

id description
K22018 MUC12; mucin-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303563.1 True 2142 mRNA 0.40 12 17573590 17586296

Neighbor

gene id symbol gene type direction distance location
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding upstream 50251 17520276 ~ 17523339 (+)
si:dkey-6n21.12 LOC108267749 coding upstream 53424 17508425 ~ 17520166 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding upstream 72694 17426669 ~ 17500896 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding upstream 154288 17405353 ~ 17419302 (+)
mtmr1a mtmr1 coding upstream 244044 17308621 ~ 17329546 (+)
LOC113539941 NA coding downstream 18011 17604307 ~ 17609478 (+)
LOC117597112 snapc2 coding downstream 30863 17617159 ~ 17620019 (+)
LOC113539967 NA coding downstream 51252 17637548 ~ 17642740 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding downstream 69024 17655320 ~ 17664976 (+)
si:ch211-196f2.6 LOC108267771 coding downstream 87252 17673548 ~ 17681486 (+)
G65933 NA non-coding upstream 70945 17410994 ~ 17502645 (+)
LOC117597048 NA non-coding upstream 88668 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 133218 17431077 ~ 17440372 (+)
G65927 NA non-coding upstream 169711 17402559 ~ 17403879 (+)
G65938 NA non-coding upstream 201451 17357338 ~ 17372139 (+)
G66128 NA non-coding downstream 7336 17593632 ~ 17634867 (+)
G66144 snapc2 non-coding downstream 63069 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 116938 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 153779 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 186257 17772553 ~ 17775309 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 172202 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1202633 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1254424 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1533606 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2914654 14632030 ~ 14658936 (+)
LOC113539940 NA other downstream 23196 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 413862 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 527137 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 611016 18197312 ~ 18208564 (+)
G66864 NA other downstream 1270160 18856456 ~ 18858652 (+)

Expression


Co-expression Network