LOC113539941


Basic Information

Item Value
gene id LOC113539941
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17604307 ~ 17609478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303564.1
AGATCTGCGCGTGTGCAGTAGAAGCCAGTGGACCGTCTCGCGCGCAGACACTGTACCGACATATTTGGGTGCAATTCGAGGATCTCTTCGTGTAAAGAACAGTAAGCGGGGAAAAAATATGACTGTATGATGTAAACTGAGAGAGATCCACAGAACGAAGGTTAACGTTAACTCATCACGAAACCCTGGAAACACGCGGTTCCTCAAGATTTTCTCTTGCAACGCCGCGGGACACAAGAGACcggggttcaaatcccagtcAGGGCGTATGTGATATCCAGCCGGATCCTTATGCAAGAAGAGCTTGTGGCAACTGTCTTAGAGGCTCAAAACAGCTGCTTCATTAACGTGGTCATCCTCTGCGCCGTATAACTGAAGATGCAGTGGACCTGTAAGCAGTGCATTTTTTCCACAAATAAAAGAGGACAGTTGTTGAAACACTCGCGTGAAACATGGAGGTTTTACATGGCAACAGCCGATACCATGTCTTCATAGTGATTGCTTGTGCACATTCAAATCTTTTAATGCACTCAAAGTGCATTTATCTGTTTGGCATCCTCGATCAGACAGGCAAAGAAGTAAATCCACAGCTGCATTCCATTGCGAGTTATGTGAATACATGGAGCCCTGCATTGAAGCAGAGTTTTTCACACACTTGCGCAGTCATTTAAAACTTAAGCAAAGAGTTGTGTGTCCATATGAAGGCTGTGATTTTCAGAGCAATGTATATTCAACATTTAATGCACACAAAAGTATTATTCACGGTAGGAGTACTACACCACATTTTAAACCAGGAATAGTACACAACATTGAACAACCAGATGAGGTGACCGAAGAAGAGAATGTTTCTTCACAGGATGACTTTGACTGTGAGTATGAGGAGTCTTTGGGTGACACACACGACTTGGAAACTCAGCTGGAACGTAACCTTGCtgctctgtttttaaaaatgcagacaGTCCTGCACATATCTGAAATTGCTGCCCAAGAAGTTATACAGCAGATCAACCAGATCCATTTACTTTCAAGGCTGCTAATACAAAGTGCAGTCCAGAAGATTATCAGTGTGTTCTCAGGATTTGGTTACCAAGCGGTATATTTCTTTGGACTCTCTGAATAAGGCTATTAAGCAGTTTCCGTACACATTTTCTGATAAAGCTGACCAACCACAGATAATTCCAAAGACCTACATCTCCAAGAGAACTATCGGGGGCAATGGCCATGAAAACTGGTCTCTCCTGAGGCTCCCTCCATTGATGATAGGGCACAATATCCGAGAGGGAGACCAAGCAAGAGATACTTATGCTTCTAAAAGATATACTAGAGATAGTGATGTAATCACACTTTACTGATGAGTTAATACACTTCCTGGAATGCAAAATCTCAGAACATAGAGAGTTACTGCAGCAAACCTTTCCAACCTACAAACTTCGTccaaaacataattttattgaACACTACCCTCAAATGATAAAAATCTTCGGCCCACTAGTAGATGTGTGGACAACACATTTTGAAGGGAAGCACAGTttcccttcaggaactcgagctgcgtcaaaATGCTATGGGAACACCCCCAGCGTgacacgctctgaatcacgtgtgcagtcagtccaatggatgggcaagacgtcacgggcggggtgacgtagcgacccggaagcttaaaagcacgtACGGTGGATACAGCAgcagctttctgtcattcagcaggcgctgtgtgtgtcagtctgattTTGTATTGTCTGTCTTTCAAAGCATCATgtcaaaagcaataaaaaagacaaaacatgagggcgagagcgggcagcgttttaggctgtgtgttccttTAGCCCGCGCTATATTACGGGTGGGGATACACACGTTGGGAGCAGAGCATGCaaagtcggctctcgagggagccagCTGCCCGCATTGCGAGCGTTTGTCACTGTGTGCGCTTCGATCCCAgaaggctctctttgaggagggagccttcaccAGCATTCCTCGTGGTGCTGGCCCCGCTTCTgtcgaggcagagcggcggttacACTCGTGGGGTTCGCAAATGGATATGGTGGAGGGAATGGAAACGGGCAAGaccctttcttcttcctcacccgCCAGATCCACTGCCTCTGGGATCGGAAGCCCACTCTGCGGTCTCTTCCCCCCGGGGAGAGGGCTCGGCGCTCCGCCtgtcttcctccgaggaggttgacGTGGAGGGCGCCGATGAGGATTCACCCCCTCAATCTCCCCAGTATGAGGAGCTGTTGGAGGTGGTTACTCATGCCGTGGCCAAGCTaaacattgactggcccgccAAGAAACGGGCTGAACCGCAGAAAAGCAAGCTCGATGAACTGCGGACGTAAGCCGCCACCTCCACGCCGGAGCCTGCCTTTCTTCTCTTGGAGGAGGCCTTTTTCAGCCCATATATTCAGTCCTGCCTCTAGTTATTATGCCAGTATGCAGGGCTTGATGATCacggttacagggcgatgccccaGGTTGAACAGACGCTTGTGAGCTATCTGTCCCCCGGTgcggcatcgtccctgaaggctccggcacTGCTCTCCAAGCCGCTGcagaccacctcagcgctggtgaGCAAAGGGTACACGGCACCAGGTCAGGCTGGTGCTTGCTTGGACACCATGGTGGTTTTGTAGGCTTACCAGGCCAATCTGCTAAAAGAGCTAGATGAGGGCATGGAGATTATGTCCGAGCATGTCACCGAGCTCAGACGAGCCGCTGAATTGTCTCTCCGTGCCACCAAAGAGACCACCCGCGCTATTGGCAGGTCCATGGCAGCACTGGTGGTGTCGGAGAGACATCTGTGGTTGACCCTGTatgatatgaaagagaaggacagggtcttcctcatggacgccccgcttgCGCCTTCTGGCCTGTTCGGCGACACCATCAGTTCCGTCGTCGACAGTTTCCAGGAGGCTCGTACAAAGGCGGCagcgttccagcggttcctcccttGCTGCTCTCTAGCTCTTGGGGCTGCCGGGCAGGTGCAGCCCCCTCCATGTGCCAGCTCCACATACCAGGAGGCACAAAAACAGAGCttcgcctcccgtgctcccctgCCTCGGGACCGGAAGCCCCTGGCCCAGAGCCCAGCGATGCTCTGGGCCAGGGTCTTCTGAGGCGAAGCCAGATCTGCGGACCGTTCTTCTGTCTAAGAAGACCTCGGCCAAGAAGTCCTGGTGCTCGTGGCCCAGGACTTCTGAGGGCAGGCCCCTCTGGGGAAGAACGGTGTACACCTCATCATATGGTGCccgtctctcctcagtgccctcGGGAGATCGACCTGCCACccatggtgcttcagggcacaGCGGTCTCCATCGAGCGCTTCTCTCAGTTTCCGCCCGGGAACGTGGCGGTACTGGGAGGCTCGCTGCCTCTTCGGAGCTCTTCAGAGCAGCTAGTTTGGCCGTCCCCTGCCAGTCCGCAGCTTCAGGGCACCGAGCTAGCCGCTctcattacaccagaggtcagtctcgagagactgattcccttagtagacTATTTTGcggcgtggaaacttctgccaaatgtgtctcaatgggtcctgcatactgtagagagaggctaccgaatccAATTCGGTTCTCCATGGCCTCGTTTTTgcggggttcttcccactctggtggaccccgagcaggctctggtaatggaacaggaagtaaacactctcctgaggaaggaggccatcgaggtggtccctcctcatgacagagagtccgggttctacagctGGTACTTCATCGTTCCGAAGAAGGGTGGAGGGTTGCGTCCCATTTTAGATCTGCATCATTTGAACCGCTCAGTCATGCGACTGAAGTTCAAGATGCTCATGATCAaacaggtcgtgtctcagatcaggtccgaggacgggtttgtcacgatcgagaaaagtgtgctttctccagtacagagaacCACAACCACTGTTTGTGACTCAGGAGAcatcgcactgtcccctctggttctctaTGACTCATCTAGCTCCTCTCGGACTCGATGCCATGGTACAGACttggccgaggctgcgtctgtacaCCTTTCCCCCGTTCTGGAGAGAGCGTGCTGGGACGGGGTCCATCTGTTGCTAGTAGCCCAGTTCTGGCCGGGCTGAGTATGGTTCTCAGACCTGACTTCTCTTCTCGACGGCTCTCCATTGGAGAATCCCGTCAGGAGGggtctcctctcacaggcggggggcaCCATATTCcacccccgcccggagttgtggaagc
>XM_034303565.1
AGATCTGCGCGTGTGCAGTAGAAGCCAGTGGACCGTCTCGCGCGCAGACACTGTACCGACATATTTGGGTGCAATTCGAGGATCTCTTCGTGTAAAGAACAGTAAGAAGAGCTTGTGGCAACTGTCTTAGAGGCTCAAAACAGCTGCTTCATTAACGTGGTCATCCTCTGCGCCGTATAACTGAAGATGCAGTGGACCTGTAAGCAGTGCATTTTTTCCACAAATAAAAGAGGACAGTTGTTGAAACACTCGCGTGAAACATGGAGGTTTTACATGGCAACAGCCGATACCATGTCTTCATAGTGATTGCTTGTGCACATTCAAATCTTTTAATGCACTCAAAGTGCATTTATCTGTTTGGCATCCTCGATCAGACAGGCAAAGAAGTAAATCCACAGCTGCATTCCATTGCGAGTTATGTGAATACATGGAGCCCTGCATTGAAGCAGAGTTTTTCACACACTTGCGCAGTCATTTAAAACTTAAGCAAAGAGTTGTGTGTCCATATGAAGGCTGTGATTTTCAGAGCAATGTATATTCAACATTTAATGCACACAAAAGTATTATTCACGGTAGGAGTACTACACCACATTTTAAACCAGGAATAGTACACAACATTGAACAACCAGATGAGGTGACCGAAGAAGAGAATGTTTCTTCACAGGATGACTTTGACTGTGAGTATGAGGAGTCTTTGGGTGACACACACGACTTGGAAACTCAGCTGGAACGTAACCTTGCtgctctgtttttaaaaatgcagacaGTCCTGCACATATCTGAAATTGCTGCCCAAGAAGTTATACAGCAGATCAACCAGATCCATTTACTTTCAAGGCTGCTAATACAAAGTGCAGTCCAGAAGATTATCAGTGTGTTCTCAGGATTTGGTTACCAAGCGGTATATTTCTTTGGACTCTCTGAATAAGGCTATTAAGCAGTTTCCGTACACATTTTCTGATAAAGCTGACCAACCACAGATAATTCCAAAGACCTACATCTCCAAGAGAACTATCGGGGGCAATGGCCATGAAAACTGGTCTCTCCTGAGGCTCCCTCCATTGATGATAGGGCACAATATCCGAGAGGGAGACCAAGCAAGAGATACTTATGCTTCTAAAAGATATACTAGAGATAGTGATGTAATCACACTTTACTGATGAGTTAATACACTTCCTGGAATGCAAAATCTCAGAACATAGAGAGTTACTGCAGCAAACCTTTCCAACCTACAAACTTCGTccaaaacataattttattgaACACTACCCTCAAATGATAAAAATCTTCGGCCCACTAGTAGATGTGTGGACAACACATTTTGAAGGGAAGCACAGTttcccttcaggaactcgagctgcgtcaaaATGCTATGGGAACACCCCCAGCGTgacacgctctgaatcacgtgtgcagtcagtccaatggatgggcaagacgtcacgggcggggtgacgtagcgacccggaagcttaaaagcacgtACGGTGGATACAGCAgcagctttctgtcattcagcaggcgctgtgtgtgtcagtctgattTTGTATTGTCTGTCTTTCAAAGCATCATgtcaaaagcaataaaaaagacaaaacatgagggcgagagcgggcagcgttttaggctgtgtgttccttTAGCCCGCGCTATATTACGGGTGGGGATACACACGTTGGGAGCAGAGCATGCaaagtcggctctcgagggagccagCTGCCCGCATTGCGAGCGTTTGTCACTGTGTGCGCTTCGATCCCAgaaggctctctttgaggagggagccttcaccAGCATTCCTCGTGGTGCTGGCCCCGCTTCTgtcgaggcagagcggcggttacACTCGTGGGGTTCGCAAATGGATATGGTGGAGGGAATGGAAACGGGCAAGaccctttcttcttcctcacccgCCAGATCCACTGCCTCTGGGATCGGAAGCCCACTCTGCGGTCTCTTCCCCCCGGGGAGAGGGCTCGGCGCTCCGCCtgtcttcctccgaggaggttgacGTGGAGGGCGCCGATGAGGATTCACCCCCTCAATCTCCCCAGTATGAGGAGCTGTTGGAGGTGGTTACTCATGCCGTGGCCAAGCTaaacattgactggcccgccAAGAAACGGGCTGAACCGCAGAAAAGCAAGCTCGATGAACTGCGGACGTAAGCCGCCACCTCCACGCCGGAGCCTGCCTTTCTTCTCTTGGAGGAGGCCTTTTTCAGCCCATATATTCAGTCCTGCCTCTAGTTATTATGCCAGTATGCAGGGCTTGATGATCacggttacagggcgatgccccaGGTTGAACAGACGCTTGTGAGCTATCTGTCCCCCGGTgcggcatcgtccctgaaggctccggcacTGCTCTCCAAGCCGCTGcagaccacctcagcgctggtgaGCAAAGGGTACACGGCACCAGGTCAGGCTGGTGCTTGCTTGGACACCATGGTGGTTTTGTAGGCTTACCAGGCCAATCTGCTAAAAGAGCTAGATGAGGGCATGGAGATTATGTCCGAGCATGTCACCGAGCTCAGACGAGCCGCTGAATTGTCTCTCCGTGCCACCAAAGAGACCACCCGCGCTATTGGCAGGTCCATGGCAGCACTGGTGGTGTCGGAGAGACATCTGTGGTTGACCCTGTatgatatgaaagagaaggacagggtcttcctcatggacgccccgcttgCGCCTTCTGGCCTGTTCGGCGACACCATCAGTTCCGTCGTCGACAGTTTCCAGGAGGCTCGTACAAAGGCGGCagcgttccagcggttcctcccttGCTGCTCTCTAGCTCTTGGGGCTGCCGGGCAGGTGCAGCCCCCTCCATGTGCCAGCTCCACATACCAGGAGGCACAAAAACAGAGCttcgcctcccgtgctcccctgCCTCGGGACCGGAAGCCCCTGGCCCAGAGCCCAGCGATGCTCTGGGCCAGGGTCTTCTGAGGCGAAGCCAGATCTGCGGACCGTTCTTCTGTCTAAGAAGACCTCGGCCAAGAAGTCCTGGTGCTCGTGGCCCAGGACTTCTGAGGGCAGGCCCCTCTGGGGAAGAACGGTGTACACCTCATCATATGGTGCccgtctctcctcagtgccctcGGGAGATCGACCTGCCACccatggtgcttcagggcacaGCGGTCTCCATCGAGCGCTTCTCTCAGTTTCCGCCCGGGAACGTGGCGGTACTGGGAGGCTCGCTGCCTCTTCGGAGCTCTTCAGAGCAGCTAGTTTGGCCGTCCCCTGCCAGTCCGCAGCTTCAGGGCACCGAGCTAGCCGCTctcattacaccagaggtcagtctcgagagactgattcccttagtagacTATTTTGcggcgtggaaacttctgccaaatgtgtctcaatgggtcctgcatactgtagagagaggctaccgaatccAATTCGGTTCTCCATGGCCTCGTTTTTgcggggttcttcccactctggtggaccccgagcaggctctggtaatggaacaggaagtaaacactctcctgaggaaggaggccatcgaggtggtccctcctcatgacagagagtccgggttctacagctGGTACTTCATCGTTCCGAAGAAGGGTGGAGGGTTGCGTCCCATTTTAGATCTGCATCATTTGAACCGCTCAGTCATGCGACTGAAGTTCAAGATGCTCATGATCAaacaggtcgtgtctcagatcaggtccgaggacgggtttgtcacgatcgagaaaagtgtgctttctccagtacagagaacCACAACCACTGTTTGTGACTCAGGAGAcatcgcactgtcccctctggttctctaTGACTCATCTAGCTCCTCTCGGACTCGATGCCATGGTACAGACttggccgaggctgcgtctgtacaCCTTTCCCCCGTTCTGGAGAGAGCGTGCTGGGACGGGGTCCATCTGTTGCTAGTAGCCCAGTTCTGGCCGGGCTGAGTATGGTTCTCAGACCTGACTTCTCTTCTCGACGGCTCTCCATTGGAGAATCCCGTCAGGAGGggtctcctctcacaggcggggggcaCCATATTCcacccccgcccggagttgtggaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303564.1 True 4271 mRNA 0.52 4 17604307 17609478
XM_034303565.1 False 4079 mRNA 0.52 3 17604307 17609478

Neighbor

gene id symbol gene type direction distance location
LOC113539911 NA coding upstream 18011 17573590 ~ 17586296 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding upstream 80968 17520276 ~ 17523339 (+)
si:dkey-6n21.12 LOC108267749 coding upstream 84141 17508425 ~ 17520166 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding upstream 103411 17426669 ~ 17500896 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding upstream 185005 17405353 ~ 17419302 (+)
LOC117597112 snapc2 coding downstream 7681 17617159 ~ 17620019 (+)
LOC113539967 NA coding downstream 28070 17637548 ~ 17642740 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding downstream 45842 17655320 ~ 17664976 (+)
si:ch211-196f2.6 LOC108267771 coding downstream 64070 17673548 ~ 17681486 (+)
LOC113539928 LOC108267768 coding downstream 85170 17694648 ~ 17698271 (+)
G66124 NA non-coding upstream 25361 17577104 ~ 17578946 (+)
G65933 NA non-coding upstream 101662 17410994 ~ 17502645 (+)
LOC117597048 NA non-coding upstream 119385 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 163935 17431077 ~ 17440372 (+)
G65927 NA non-coding upstream 200428 17402559 ~ 17403879 (+)
G66144 snapc2 non-coding downstream 39887 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 93756 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 130597 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 163075 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 263921 17873399 ~ 17877074 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 202919 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1233350 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1285141 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1564323 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2945371 14632030 ~ 14658936 (+)
LOC113539940 NA other downstream 14 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 390680 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 503955 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 587834 18197312 ~ 18208564 (+)
G66864 NA other downstream 1246978 18856456 ~ 18858652 (+)

Expression


Co-expression Network