LOC117597055 (LOC108261462,LOC108261092)


Basic Information

Item Value
gene id LOC117597055
gene name LOC108261462,LOC108261092
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4395485 ~ 4408386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303590.1
ATGGAGGGCGAAGctggagaagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACATTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGgtacaaaaataataagcagTTACAGCTTCTGAACAGtgaacaagcacacacacttaaagtgACAGTCGATAATGCAGGAGAAACAGTGTACCAGTGTCGTGCACGCAAGAGAAAATACTACAACTACTCCTACACAGAGAATTACTCCTACACAAAGCTCAGTGATTCTGTCAGGATTACAGTGAGAGcaAGACCTAAACCAGTGGCATCCATAAATCCTGATAaacaggtgttcagtggagacGCCGTCACTCTGAGATGTGACATACAGGATGAAGGTGTCTCTAGCTGGCAGTACAGCTGGTATAAAGATGCTTCACACAGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACACAGGTAAATACACCTGTAgagcagcagagagaggaggCTCACGCTCCTCACACttcagtgatgctgttacactgactgtatcagAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCTTAACTCAAATAACAGATAGTCGTGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGgTGAATCTCCCCCAGTATCTCTGATCATCAATCCCAGCAGAACCCAACACTTTACTGATGACTCTCTTTCACTGAGCTGTGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCGTCAGTTACAGGATCTACATGTAAAATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAAAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACACTGTTTATATGGCAACACAAAGCCCTCATATCTCCGAGCTGATTTCTATAAAGATAGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGATCTTAGTCAGAGcGTCAGGTCCATCATGTGTAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGGGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAACAAAAGAGGatgcatttactgtaaaaataatttcataatttcttgttttttagGGCTTTGTGgggattttaaaataatactgatttgtcattttaatgtcatgctgttatttgcTCAGCATCTCATAGACCCCTCGTTGTTCTGACTGAATTTGTTTAACTAAAGCCTGCAAACCTCCTCATGAGGTGAAAGTTACCATTTGTGTAGTTTCTAATAACACTTATATCCTGCTAATGCAAAACagagtaaaaatgaacaaatattctttaaaaatatttattggttAGGAGAAAATTTTGATGCATTGTCTGAGGGTTGAGCTGTGCCTCTGCAAAATAACATCTGACATGTGGGAAATAAATGTGTCTGCTATTGGAGTGAGTTTAATCTCAACATGGTGACCTGCACATTAAATCCTCAAAACACTTCATCTAACTGTAATGAGGTTTAAGCAAGCACAGTAATCTGTGCAAGATGGTTGCTTTAAGTTCAGAAATTATAGAATGATACTCTACTCTGTCAGTTGCTGGACCTCTGTTAACACAATCGTGGTTTTCAGAGTGTGGGGTGCGTCCCCTGAGGGAGCGCACAGGTACTGCAGGGGGGGCACCgcatatc

Function

NR:

description
PREDICTED: obscurin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303590.1 True 2247 mRNA 0.45 8 4395485 4408386

Neighbor

gene id symbol gene type direction distance location
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 61318 4315778 ~ 4334167 (+)
LOC117597051 LOC108261462,LOC108261092 coding upstream 278436 4090797 ~ 4117049 (+)
LOC117597091 LOC108261462,LOC108261092 coding upstream 352616 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 389144 4005153 ~ 4006341 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 414865 3973201 ~ 3980620 (+)
LOC117597057 NA coding downstream 9163 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 55552 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 71112 4479498 ~ 4487366 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 331184 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 365800 4774186 ~ 4789253 (+)
LOC117597097 NA non-coding upstream 276895 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 340255 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 344237 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 419514 3975285 ~ 3975971 (+)
LOC117597093 NA non-coding upstream 483739 3905850 ~ 3911746 (+)
G59304 NA non-coding downstream 147009 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 255225 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 257626 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 261477 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 262594 4670980 ~ 4671460 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 1480 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 99020 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 333971 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 659162 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 747425 3639830 ~ 3648060 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 124535 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 242091 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 299056 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 538751 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 565809 4974195 ~ 5014813 (+)

Expression


Co-expression Network