LOC117597057


Basic Information

Item Value
gene id LOC117597057
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4417549 ~ 4431006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303591.1
ATGGTCCAGTATATTGCTGCCCCTGGTGGGGCATGTGATGTGCGGTCTGTATTTAGGCAGTTCGTGGtcctgactgatacatttcatgaatgttattcctatGAAGTTGCTGTGTCTGTGTCCACTAAAATAGAAGCGGGCCGCCCCAACCCCAGAGAGAACACAGGAAGTGTGCTGATTTCACTTATACCAGTGGCCCATGCTCAAGGGAGTCCTAAAGCTGTGGTGTCCATAAAGCCTGATACACATGTGTTCATTGGAGAGCGTGTTACTCTCAGATGtgacatacagagaggaggaagCACTCAGCGGACATACAGctggtataaaaataataacagactcacagacaacacaatgcAGGAGTTCATAATCCGGTCTGTTACTGACTCTGACAGTGGTGACTACACCTGCAGACGACAGAGCAGTGACTCTCAGAGGTCAGAGAtcagtgatgctgttacactgactgtatcagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGAAGTTTCTCTGgtacaaaaataatcagcagttACAGCTTCTGAACAGtgaacaagcacacacacaagtgacaGTCGATAATGCAGGAGAAACAGTGTACCAGTGTCAGGCACGCAGGacaaactactactactacacctATTACTATGACTACTACACAGAGCTCAGTGATCCTGTCAAGATTCCAGCCAGACGTATGTCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303591.1 True 780 mRNA 0.47 6 4417549 4431006

Neighbor

gene id symbol gene type direction distance location
LOC117597055 LOC108261462,LOC108261092 coding upstream 9163 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 83382 4315778 ~ 4334167 (+)
LOC117597051 LOC108261462,LOC108261092 coding upstream 300500 4090797 ~ 4117049 (+)
LOC117597091 LOC108261462,LOC108261092 coding upstream 374680 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 411208 4005153 ~ 4006341 (+)
LOC117597089 NA coding downstream 32932 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 48492 4479498 ~ 4487366 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 308564 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 343180 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 374648 4805654 ~ 4866411 (+)
LOC117597097 NA non-coding upstream 298959 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 362319 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 366301 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 441578 3975285 ~ 3975971 (+)
LOC117597093 NA non-coding upstream 505803 3905850 ~ 3911746 (+)
G59304 NA non-coding downstream 124389 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 232605 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 235006 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 238857 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 239974 4670980 ~ 4671460 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 23544 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 121084 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 356035 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 681226 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 769489 3639830 ~ 3648060 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 101915 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 219471 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 276436 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 516131 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 543189 4974195 ~ 5014813 (+)

Expression


Co-expression Network