LOC113547242 (LOC108268241)


Basic Information

Item Value
gene id LOC113547242
gene name LOC108268241
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4774186 ~ 4789253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303594.1
atgggcaagaaggcctggcgTGAAGTTGGTGCTCCAGTTCAtatcaaagTGGCTCAGCATCAGTTTGCAATCAACTGTCCAATCTGCCTGGACCAACTGAAGAATCCAGTGACTGCAGCTCGTGGCCACAGTTTGTGTCTGGACTTTAGTGGAGGCTGCTGGGATCAGGAGGTTCAGAAAGGAGTCTACAGCTGCCCTCAGTGTAGACAAACCTTCACTCCAAGACCTGACCTGAAGAACAATGTGATGACTGGAATGATGGAGAAGCTGAAGATGACAGAATATGCCACATCTCTGGAGTGTGATTCCTGCACTGGGAGAAAATCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAACTGCTGGAGGTTTACTGTCGCACTGACCAGCAGTGTATCTGCCCTTTGTGTATGTTAGACAAACATAAAGGACATGATACAGTATCAGCTGCAGCAGAAAGAGCTGAGAAACAGAGGCAGTTGACAGGGATGCACAAACAATCCCAGCAGAGAATCCAGGACATGGAGAATAAGCTTCAGGAGCTGAGGAAGGCTGTGAGATCTCACCAGTGCTCTGCGCAGGCAGCAGTGGAGAAAACTGAGATGATCTTTGCTGATCTGATCAGAACCATTGTAAAAAGACATAATGACCTGACAgagctgatcagagctcaggagaaagCTGCAGTGAGTCGAGGTGAAGAAGTCATGAagcaactggagcaggagattgcAGAGCTGAGGAGAAGAAATGCTGAGCTGGAGAGGCTTTCACACACAGAAGATCCCATCCATTTCCTCCAGATTTTTCAGTCTGCCTCGGCGTCTCCTGTACCTGCAAACATCCCCAGCATCATATTCAGTTCTTTCCACCCTTTCAACAGTGTAATAAAGTCTGTGTCTCAGCTGAGAGACAAACTCAAAGAATCTTGTAAAGAGGGCTTTGAGGAGATATCAAGTAAAGTAACAGAAGTCCAGATTATTCTTCCAGATGACCATAAAACCCGAGAAGAGTTTCTAAAATATTCCTGTCAGTTCACACTGGATCCCaacacagtaaataaacacctctgtctgtctgagagGAACACAGTGGTGACCTGCAGTGAAACGGCTCAGCCGTATCCCGATCATGCCGAGAGATTTGACAGCTGCTGGCAGGTGATGTGTAGAGAGGGTGTGTGGGGACGCTGTTACTGGGAGGTTGAGTGGAGCGGACATGATGGGGTTTCTATAGCAATGTCATATAAAAGCATCAGCAGGAAAGGAAACTTTGCTGAATGTGTTTTTGGATCCAGTGATCAGTCCTGGAGATTGCTGTGCACTCCGTCCTACTACTCGTTCtatcacagttgtaaagaaattaaaatccCAGTAATACCGAGCTCCTCTAGGataggagtgtatgtggatcacagggcaggaactctgtccttctacagcgtctctgacacgatgaagctcctccacagagttcacaccacattcactcatCCTCTTTATCCCGGGTTTTGGTTGTATACATCCTGGGGTTCTACTGCTCCTTTTATAGGAGACCGGCAGTGTGAGGAGGCGTCTCTGCATCTCCACATCGCTCGTGTAGCTTCATTGGTATTCCGGTGTCTCACTCGCCCCTCAGCATCTTCCAGACGATCCCAATTCCTCAGCATTAAGCCCTTCACACACGAGCCCTCGCCGCCTCgcagctacaggaagccagtggagggagacGAAGAGGGATGTGATGTGGGTCCTTTTGTGCTGGTTGAAAACAAGGcatgctgctgcattctgaatcaTCTGAAGGGGTTTGATGCAGCTGGCTGGGAGGCCCGGGAGTAG

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303594.1 True 1956 mRNA 0.49 11 4774186 4789253

Neighbor

gene id symbol gene type direction distance location
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding upstream 27884 4739570 ~ 4746302 (+)
LOC117597089 NA coding upstream 260723 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 286820 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 343180 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 365800 4395485 ~ 4408386 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 16401 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 90547 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 107715 4896968 ~ 4913622 (+)
LOC117597060 NA coding downstream 133398 4922651 ~ 4934918 (+)
LOC117597061 LOC108261662 coding downstream 255875 5045128 ~ 5050075 (+)
G59329 NA non-coding upstream 75391 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 102726 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 104103 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 107731 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 109720 4663611 ~ 4664466 (+)
G59478 NA non-coding downstream 161047 4950300 ~ 4950651 (+)
G59479 NA non-coding downstream 163118 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 168809 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 222667 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 474763 5264016 ~ 5266014 (+)
G59366 ube3c other upstream 65788 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 121065 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 221148 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 380181 4049152 ~ 4394005 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 157884 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 184942 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 390301 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 599115 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 790543 5579796 ~ 5596225 (+)

Expression


Co-expression Network