LOC113547214 (c8b,LOC108268235,LOC105898377,LOC107562846)


Basic Information

Item Value
gene id LOC113547214
gene name c8b,LOC108268235,LOC105898377,LOC107562846
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4805654 ~ 4866411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303595.1
GGGTTTTCAAACCTTCAGTCGCGAGGAAGGCGCTAACTGTCACTCAGCTACTTCAGCTACAGAGCGGTCAAGATGTACACACTGTTTCTCACggaaatttaaaacaaatacaaagatATATTCTGGTTTTTATGGAGATATGGACGGATTATGGAATTAGTTTTCAATTTTATCCAAAAGGATGAGTTAATAAACGGAAAACGGTTGTTTTTTTGAGGGGAAAAACTCCCTGCTGCTGAGTGCCTACAGGAAGGTTTTGTGATGCTGCGTGAGTCAGAGCTCGGCTTCCTCTACGTGACAAGGTGTGAGCCACTAGACCTGAACTAAACGGCTAAAGggaatacaaaaaaagaagagtttGTTCTCTCAGGCTGAGGAGAGTGGAGGAGCAGAACGAGAGCAGCATGCAGGATCGAGCGTAGCCAGCTAGGAGACGAATCCATGCAGGACAAGAAGAAGCAGGACTCAGGAGGATGTCGACAGAGGAAGAAACACAAGCAAGCATCAAAGCCAGCGTGAAACAGGAGTCCAGGAGGAAAGGTCAGAACCGTAGCGAGCAGGCTCTGATAAAGCGCTTCAGAGGTGATGGAGTGCGCTACAAAGCCAAGCTGATTGGGATTGACGACGTGTCTGCGGCACGTGGAGATAAACTCTGCCAGGACTCCATGATGAAGCTGAAGGGTATTGCTGCTTCAGCTCGATCGAAAGGAGAGCACAAGCAGCGCATTTTCTTAACCGTCTCCTTCAACGGCATTAAGATCTACGACGAGAGATCCGGGGTATTACAGCATCACCATTCTGTGCATGAAATCTCCTACATCGCCAAAGACACCAGAGACCACCGTGCCTTCGGCTACGTCTGCGGGAAAGAGGGAAACCACAAGTTTGTGGCCATCAAGACAGTCCATTCAGCAGAGCCTTTGATTCTGGAGCTGCGTGACCTCTTTACACTGATCTATGACCTGAAGCAGAGGGATGAAGGGGAGAAGAAGGCACAAAAAGCAAAGCACTGCGAGCAGGCTGTTTATCAGACGATTCTCGAGGACGACACTGATGACCCAGTGTATCAGTACATTGTGTTTGAAGCTGGTCACGAGCCGCTCCACGGCCCCCAATCAGAGGAGAGCATTTACCAGGTCCCAACGAGCCAGCAGAAAGAAGGGGTCTATGATGTTCCAAAACGCCATTTTATGACTAACATCAGTCAGTTTGAACTGTTCGGTGACATGGCCACTCCTCCAGACATTGTATCTATGCCCGCGTCGCCCGCTAATACTCTGGACCCCGGGCGACGACGACATCAGCGTCACCCTGAGCtcttcacacacttcagccCCCCTGCCGTGCCTTCAGGCTACATGACGATGGGTGCAGTGCAGGCGGCTCACTGGGCTCAGCAGTCCTTCGCAGCTCCAGCAGCTCCACTGGCGTTTGGTGTTCAGGCTCCTCTGCAGGTTGCTCAGGTTCTTCCTGGAGGGCAGCCAGTGATCTGGGGCCAGGCCAACCTTTTCCACTCTCCCGGCCCAGGCCAACAACAGTGGGCCTTCGTACCAGCCGGCGCCTTATTTCAAGGCCTCGTTCCCTTAGCGGCCATGCGTCCTCGCATGTCTACACCGTCTGCACCATCCTCGACCATCACCAGCCCTCAGCATGCACCTGAATCCAGAGACGCCCCAAGCAGTAACCCCCCGGCAGAGGCAccaggctcacacacacagcctgctgACAACAGCGACCCACCCACGGTGATGGGAGGAGCTTCACAGCCTGCTGAGAAGCAGGAAACGGAGGTCTGTAGCGGAGATCTTGATCTCTCCCAGCTGAGTTTGACGCCGGGGTCATCGACATCGCCGTCTACTGCAGAGTCTCCTGCTACACCTGCTTCCCAGGAGGGCGACATGACCTTGACCTCAGACCCCTCTAAAGATCTGTCTGTCATCAGAACAGAGAACAATGAGAGCCATCTTAAAGAGCCTTCTCCCACAGGAGGCGCAGAGCAGAGCGTCAGCCAAGATGTGGCAGAGGAATCGGACTGTGTCTGGCATGCCGCTCTCTCAGATAAGAGGAAGATTAGTCCTGTTATTCCGTTTGATTTTGTCGTTTCTCTCGTACCTTCTCCATTAACCACAATGATTTTTCTTCCTACAACACGACACACTCTCAGCACTGCAGCACTTCAGGCTTTATTCATCTGtgCGGTGGTTGTGGTGTGCAGATCCCAGTCACCACCTCCACTCAGTCCTGTGGACTGCTCCCTGTCCGAGTGGTCACATTGGACCCGCTGTGACCCCTGCCTGAAAAAGAGGTTCCGCCATGCCACAGTGCTGCAGCTGTCTCAGTTTGGGGGAGAGCCGTGTCATGAGCTCGGCCATGAGGAAGAGTCGTGTACGCCACCCTCGCGCTACTCATGCCGCAGTTCTGTGCCACTCTGCCAGGGCTTCCAGTGTCCCAGCACAGgtcGCTGTGTGCCGGAGGGGCTGCGCTGTAACGGGGATGATGACTGCGGCGATGGGTCTGATGAGCTGAACtgtaaaaaagtgtttaaagcCTGCAACCAGCCAACTGAAGAGTTCTACGGCATAGAGAACCTTGccaaaggGATTAACGTGCTGAACAATAACTTGGAGGGTTTGGTGCTGGATAATCGCTACTACGCTGGCGGCTGTTTGCCCCATTTTATCCAGGATGTGCGCTTCAGGAAACCGTACAACGTCCAGCAATACACTTTTGAGACAAAAGGCTCCTACGATTTCAAGCTGGAATCTTACGACTCGTACAGAGAGTACTCGGAGCACACGATGAGGGCCACCATGTCCAGGACCACCATCTCCTTCTCCTTCGCTATACCTAACGTCTTCAAGATCGGCTTTAACTATGATGAAAGCAAGTACAGGAAATCTGTGCAGAAGCTTCGCAGTTATGCTGGGAAGATGAACAAGTTCATTCATGCGCACTCCCGGCTCGAGCTAGCACGCTACGCCCTTAAGGTGGACAATCTAATGCTGCACCCAGAGTTCCTGTCACGCCTGCGAGCGCTCCCGATCGAGTACACGTACGGCGAGTACCGCCAGCTGTACAGCGACTATGGCACACACTACATCACAGAGGCCACGCTCGGGGGAGACTTCGACTACACCCTCATCCTCAACAAGGACAACATGGAGAAATCTGggtacACTCTAAACGATGCCAAGTCGTGTCTGCAGATGGGCTTAAAACTCGGAATCAACATCCAGGGTGTGTACGTGTCAGGAGGGATATCAGGCGGAGGCTGCAAAGGCCTGCTGAAAGAGTTCGGAGAAACTGTTAGTCACTCGTCGATGGTGGAGGATTACGTGGCTGTGGTCAGAGGAGGAGACAGCGAGACAGTCTCACGTCTGGCCTCCAAGCAGTTCCCCACGCCGGACATCATGCAGCTGTGGGGGGAGGCCGTCCACTACAACCCTGACTTCATCAGCACTAAGATGGAGCCGCTGTATGAACTAGTGAAAGGAAAGGACTTCACCAATGCCAACATGCTGAAAAAGAACCTGAAGCGCGCGCTGATGGAGTTCCTGAGAGAGAGCGACTCGTGCCGCTGTGCCCCCTGCCTCAACAACGGAGTGGCTGTGCTGAAAGGCACTCGGTGTGATTGTATCTGTCCTACTGGCTTCAGCGGGCTGAGTTGTGAAGATACGAAACGTTCAGGAATGCCGGTGGACGGAAACTGGAGCTGCTGGTCCGAATGGTCAGCCTGCAGTGGTCAGACCAAAAAGCGGACTCGTCAGTGCACCAATCCGGCGCCGCGAAACGGCGGAGGTTCCTGTCAGGGGATACACGAAGACTCCACTGACTGCTTTTAACTACACAGCAAAAATACAAGCCACAATACTGACATCGGGATCAGAAAGGCAGAATATGGAATATTTATGTTTTGCAAAATGCTCCTGTGAAATAAATCCAGACAAAAGAA

Function

symbol description
c8b Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in liver. Human ortholog(s) of this gene implicated in type II complement component 8 deficiency. Orthologous to human C8B (complement C8 beta chain).

NR:

description
PREDICTED: complement component C8 beta chain

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
K03998 C8B; complement component 8 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303595.1 True 3952 mRNA 0.53 25 4805654 4866411

Neighbor

gene id symbol gene type direction distance location
LOC113547242 LOC108268241 coding upstream 16401 4774186 ~ 4789253 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding upstream 59352 4739570 ~ 4746302 (+)
LOC117597089 NA coding upstream 292191 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 318288 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 374648 4417549 ~ 4431006 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 13389 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 30557 4896968 ~ 4913622 (+)
LOC117597060 NA coding downstream 56240 4922651 ~ 4934918 (+)
LOC117597061 LOC108261662 coding downstream 178717 5045128 ~ 5050075 (+)
LOC113547260 LOC108261847,LOC108267254 coding downstream 285904 5152315 ~ 5178390 (+)
G59329 NA non-coding upstream 106859 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 134194 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 135571 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 139199 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 141188 4663611 ~ 4664466 (+)
G59478 NA non-coding downstream 83889 4950300 ~ 4950651 (+)
G59479 NA non-coding downstream 85960 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 91651 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 145509 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 397605 5264016 ~ 5266014 (+)
G59366 ube3c other upstream 97256 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 152533 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 252616 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 411649 4049152 ~ 4394005 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 80726 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 107784 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 313143 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 521957 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 713385 5579796 ~ 5596225 (+)

Expression


Co-expression Network