LOC113547246 (LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261)


Basic Information

Item Value
gene id LOC113547246
gene name LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5191076 ~ 5191745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303598.1
ATGGCAGAGGCGAATATTTCAGTAGCTCAGGATCAGTTCAGCCGTCCAATCTGTTTCGATCTAATCAAGAATCCAGTAGCTCCTCTCTGTGGACACAGTTTCTGTATGATGTGTATTAATGACTGCTGGGATCAGGAGGATCAGAAGCAAGTCTATAGCTGTCCACAGTGTAAACAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAACACCATGCTGGCTGAAGTAGTGGAGATGCTGAAGAAGACAGGACTCCAAGCTACACGTCCTGCTCAGTGTTCAGCTGGACCTGAAGATGTGGAGTGTGATTCCTGCACTGGGAGAAATTACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGACCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAACTGCTGGAGGTTTACTGTCGCACTCACCAGCAGTGTATCTGCATGTTGTGTACCATGGATGAACATAAAGGACATAATGCAGTACCAGCTGCAGCAGGAAGAGCTGAGAAACAGGTAACAATATCTTACAGCTGTCTTTTACAACTAGtcaagggaaaaaataaaacaaataacaaataagtaAGATTGCCCT

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303598.1 True 670 mRNA 0.46 1 5191076 5191745

Neighbor

gene id symbol gene type direction distance location
LOC113547260 LOC108261847,LOC108267254 coding upstream 12686 5152315 ~ 5178390 (+)
LOC117597179 NA coding upstream 26452 5164066 ~ 5164624 (+)
LOC117597061 LOC108261662 coding upstream 141001 5045128 ~ 5050075 (+)
LOC117597060 NA coding upstream 256158 4922651 ~ 4934918 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding upstream 277454 4896968 ~ 4913622 (+)
LOC113547266 NA coding downstream 3930 5195675 ~ 5209761 (+)
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding downstream 48938 5240683 ~ 5252849 (+)
LOC113547263 LOC108261082 coding downstream 94612 5286357 ~ 5306541 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding downstream 210539 5402284 ~ 5410215 (+)
LOC113547281 LOC108267848 coding downstream 239491 5431236 ~ 5433720 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 173274 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 232762 4958062 ~ 4958314 (+)
G59479 NA non-coding upstream 238478 4952371 ~ 4952598 (+)
G59478 NA non-coding upstream 240425 4950300 ~ 4950651 (+)
G59329 NA non-coding upstream 492281 4677167 ~ 4698795 (+)
LOC113547270 NA non-coding downstream 72271 5264016 ~ 5266014 (+)
G59663 NA non-coding downstream 110137 5301882 ~ 5369456 (+)
G59725 NA non-coding downstream 237536 5429281 ~ 5429622 (+)
G59712 NA non-coding downstream 246099 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 300456 5492201 ~ 5492461 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1363 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 176263 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 234609 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 482678 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 537955 4650477 ~ 4653121 (+)
LOC113547289 LOC108267851 other downstream 196623 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 388051 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 951787 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1403381 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1492591 6684336 ~ 6704346 (+)

Expression


Co-expression Network