rbm33a (rbm33)


Basic Information

Item Value
gene id rbm33a
gene name rbm33
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28443778 ~ 28468852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303603.1
AGACTGGTCCGCCATGTTTGTGTATGACTTCAGCGCCGTCTTCACATAAATACACTGACTATCCACATCAAGTCCCAGAAACACCCCGATAGCATCTGTCCCAATGCACTAATCCACAgtttaaaggaaataaacacCCTGAAGACATTTGCCGTCCTCTGTAATGGCGGCCAGCGCCCGAGATGAGGAGTTTGATGAGTATGATAAACCGGGAGCTGAGAGATCGAGGAGGCGAAGAGGAGATGATGATGACCTGGACAGTGATTTCGAAGGCGACCTGCTCGAGGAGGACTGGCTTTCATCCAAGAAGAATCCGTCAGAGCTGTCAGACGAAGAGCTTAACGACGACCTGCTGCAAAGTGACGAGGAAGACCAGAACACGAGtgcgcAGGGTGCAGCTGTGAGCCTGAACGCGACGTCGGGTCTCAGCGAATCTTACGAGCTCCAGGAAGGAGATGAATACGCAGCGGAGGAGTACGGCGTGacggagggagaggaggaggaggagtacaGGGCAGACGAGTACGGAGATGACGAGGGAATGGAGTACAACACGGGAGGAAACGAAGACGAAGTGCTGGACCTGCAGATCAACGAGCCGCTGGATGATGAATTTCAAGTCGAGGACTACGGCGCTGAGCCCCAGGAAGTGCAGCCTGACCAACAGGAAATGACTGAGGCGGAGGGGGAGGAGCCTGAGGAGGAAGTCGAAGATGTCTCCCAGGTTACAGAAGCAGAGGAGATGGAGGCCGAAGCCGAACCTGAGACCGAGACGAAGGAAGAATCCGACGAGGACgaagaggatgatgaagaaTCCGAGCGGCTGCGGTTCAAAACCGAGCGCAAAGACAGCACCGTGGTCCGTCTCTCCGACGCCACCAGCAAACGGCGGAACATTCCGGAAACGCTGGAACTGACCGAAGAGGCCAAAGCGGACCTGCTGGAGTTTGAGGAGAAGGAGCGGCTGAGGAAACAAGGTCGCTTTGGTGGacgagggagaggaggaggggtaggtggaggaagaggaggaggacctCCCGCGTTCGGGATGGGAGGTTTCCGTAAAGACGGAGGCGTAGGAAGAGGGCGGATAAACGAACACAGACCTCCACTGATGCCAATGAACTTAGGCATGCAgccgaGAATAATTCCTCCTCAGTCGCATCGTCCTCAGCCGCGCCATTCCGTCCAATGTGGAGGTCCCAGTCTTTTCCCCACGCCGCTCATCCCGATCCCCCAGCAGCCTCTGCAGTCCCTGATGCCTCCGCGCTCACCGGCGCTGCACCAGAGGCCGCAGCAGGACCTGCAGCCGCCGCGCCCTCACGGACACCCACAcgcacttccacacacacactccaaccagcagcagcaccagcagcagcagcccaAGAACATTCACATCAACCCACATTTCAGAGGGCCGTCGTCGTCCTCACCTGTGCACGTTCCGTTGGTATCATCTGCCCCAAATCAGCCCAGACCCAACCTCGGCCCTCAGAGATTCCCGGGCCCTGTGGATTTCCCGCAGCACCTCCAGGGTAATTTCCTCCAGCCTCAGAGACCCCCGCCTCAGGAGCAGTGGAGAggaccaccaccacctcctcaCCAGGAGAGGGAGCCATTCTACAGCAACGAGCCACGTTTTCCAGCCCAGCCCCTGTTTGATCTCCCAGGCTCCGCCCCCCTGTTGAACAACAACATCCTCCCTCTGTCCTTCCCTCAGCCGGGGCCGGGGTTCTGCCCCCCGGGCGGTGGAATGTTCCAGAGAGACCTTCCTCCTCCTCGCCACAATCTGCCCCCCCCTCAGCCTTCTCCTGCCCCGCCTGCGCCCCGCGGTTTCATGGGACACAGACAGCCGTTTCCTCCACAGCAGCACAACGCCCCCTTCAGTCCTCAGCACGGGCCATTCGGcatgcagGGCCTAATGCAGCCACACCCTCAGCCGCAGCACCACGACCCGCCCCTACCTCCGCATCATCACTCAATGCACCAGCATCAGCACAGACAGGAAATTCCTCCTCTGCCTCATAATCAGCATCACCAGCATCAACACCAGGGCCAGCCTGGGCAGCAGCATCCCATCATGCACCTCTCTCAGCCGCCCTTCCGTCAGCCCATTCAGGGTGGACCTAGACAgatgaagccccgcccacaaaaCAACATGGGTCACTTAAGAATGgGGTCACCTTCGTCCCTGCAGCAGCTCCAGAACCTCCCTCAGCGCAACAGTAACCTGCGCGAGCTCCCCATCGCCCCCGGCAACAATGACCCCGTCCGCCCCCCTCAGCCTAGGCCCATGACCAGGGTCACCCAGAATGCCCGGCCTGGTCAGGGGATTGGGGGAGGAGCCATTGGACGAGGGCGGGGTCTTGCTAAACCTGCCCCGACTCCAGGCGCTTCAGAGATGAAGAATGAAATACCAGCCCCACAGACAAGCACACCTGTACAAAAACCAACGCCaaacacacctgcacaggatgaggatgaggacgaGGAAACGCGTCAGTACCGGCTGAAGATTGAGGAGCAGAAGCGACTGCGTGAGGAAATCCTTAAACGCAAGGAAATGCGCAGGCAGATGCAGGCCGGCGCGCGCAAAAAGGAGCTGCTGGAGCGCCTCGGGGGCCAAGTAACACCCCAAACAACCCCCATGCAGACTCAAACCACCCCGACTCAACCCCAAACCACCCCAACGCCCCCCGCCGCGCCCCAATGGGTTAAATCCCGCCTACAGAACCCCAGCGTAGAGCAAAAGCAGCGTACGCAGAACCCACAGAGACACGTTCCACAGCTCCAAAGTCCCAACGTCAACGCCACGGCCCCTCCAGAGGAGAACAAGATCACACCGATCCAGACGCAAGCTAACGCTGTGAGGAAGAGGACCATCATGCAGCGCGTTAACACCAGCGGCTCGCCTCAGATCCCACAAAAAGTGCGAGTTGTTAAACGACTAACGGGCGGAGAGGAAGCTCCGCCCCTCCAGAATCAGCCGCAGCAAATGATTGGTCGAGCCGCTCCTCAGCAGAGACTGAGCGCCGTCAGGAAGGTCACGGTGGCAACAGCTGGACCACAACAACCtccgcagcagcagcagcagcaacagcagcagcagcaacagcagcctGAAGTGAACCAGAGTAACCGGGTGGTGGTTTCGGGTCGGGGGCGTGGTCGTGGTGCTCGTGGCGGTCGGGTGGCGCCGCAGAACAGGCAGAATACCCGAGCTGCTGAGTCTCAGCCCAGCACGGTGTCTATAGACGGCCTGTCGTCCTCTACCACCGAGAAACAGATCAAAAACCTGCTCAACTCCATCGGCCCCATACAGATGTTTAAGATGATGCCGCAGCAGAGGAAAGCCATCGCTACGTTTGTGAATCCTCAGCACGCTCTGAGTTTCCAGCACAGCTTCCACAGGCACATGATCGATCTGTCCCACATCGACGTGACCATTATCGACGGCTGAGGATCGGGCGAACGAGAGAACGATCAGCACAAAGCCGAGAGATCGAAGCAAGCTCCTGGAATCAAGGCCGTGTTTTACTCTAAAGCTCTCAAAACACTAAAGCAAGTTTCAGAGGAACTAACGGGAGAAACAATGGCAAACGACTCGGATTTAATCATCCATGGTTTCACTGAGAGCTGCTGTTCCTGCTTTGTGTTACGTACTCCACTGATAATTCCCAAAACTGAGTCAAAGGTGGGGAAGTCGCTGTGACTGTAGACACGCCGtttactgttattgttattattattattttttctttcgaCTGATTGATCAGTAAGTGAAACGAGAGAAAGGCTGTTTTTTTAAGCGAACCCGTGTAGTCAATAACGATGACGCACGATAATGGTTGCTCCCGTCTTCGTATACACTTTTAAATACACACTCCTGGACAAGATTTCCATTTCCTTGAGATTGAAAAGCAGGCTGGAGCTGTAGTCTTTGccaccactagagggcagcatGCGAGTAGAAACCACCATAAGAGATTTGTTCACACGTAATTATTGAATAATTTACGTAATTCGCTTTATCTGAGGTCATGAAGTATGTGTAGTTCATCTTTCAGCTCAGGTCACACTTTACGATCCCATTTATTACAATTAGCCAATATATAATCAGCTTTTATTAgaaaggttttattttggatCTCTGATTGTAGGTTTAAATATTAActtgctatttattttattatcataaaTCCTCAATGGCTAGTTTTCCAGAACGGCTAAAAATTCAAATGTTCATATTTCTCTCGTTTTCCTTTCATGAAATAATTGGCagtaagttgttttttttttgtttgtttgtttagatttaTCCACTTAAATGAAAATAGTAAAAACACACCCGCGCTTCGACGTCCTGCTTGCGCTCCATAAAACGTGCGGTTGTATTGGTCTTGCGAGAACGTCGTCGTCTTGGCTTTTCCAGTTACACTGCAGCATTTCCAGAGTGCTTGAACATACTAGCATCTTAGCATTTGATCATTTTGGATAGGCTAATAGCAGCAAAGCCACAATCTGAGAGTTTGTTAACTAGCGTTGTGTGTAATTAGCCGTAGTTTCCTTTCTGGTTGTTAGATTTTGGGACCACAGTGTCCTTTCGCTCTCGCTCATGGTTTTCTCTGAGGTATTTTTTAACGCTAGCTGCATGCTGTGTCGTAATTAGCCTATACAAGTCGATCTTTTCTGCTCTGATCAGCTATAAAGAGGTTACAGTGAGGCATAttaacagtttttttgttttgctatgTCCTAAACTTTCAGCACATTCCCCCAGATTCCCCAGTTTGAAGGAATATTAGACTAACACTGCTAATTTCACTCTAGGTCTTTGAGTTTCCTTCATTTCTTCCACTTTAGCTATGCTAACAGTGTAATGTTTACAACTTCCTCGTATAATTCACAGCTAGAGCATTAGATTTCAATAAGATTGAGTTCTAAAGTACACTTGGCTTTTTTTCCGCTCAGTTTTCATCTCTTGTTACATCCAAACATTGTGTTTGCGTCTGCGTCTGAAGGATTGTTATGTTATGCTAGCTCTGTGCTAACCTGTATAGATCAATTTGTGGAGATTTTAAGTGGTTAGGGTTTTTTTCTGAGGTAAAAATGTCCCTATTTTTATCAATTTGTTCACTGTGTTGCTTCAGTGCGCTCCTCCATTTCCCAAATTTGAAGGATTGTTATGCTAGCATTGCTAACTAGCGTTCTAGCAAATATAGatcagtctttctttctctattcctctctctctctttctattttctgtTCTTCATTATGTTATCTTTAATGGTCGCTTTTATTATGATCTGCTTCCTGTGCTACTTCCCAGTTCCCTCAGTTTCTCATTGGGAGTCTGAGGGGTTAGCTTGCTAGCATTGCTAACTACTTTGAGGTAATTATAGATCAGTCTTTATTTTTCCCCCGGACTCTTGTGGTTTTAAAGGCTGGAGTTGTTTTGAAGggcattttcattctttttccatTTAAGTCCAGGCATTTAGCGCTTCAGAGTCATCAGGATTGAAGGTTTGTTACGCTAGCTTTGCTGATTAGCGTTGTGAGTGAACACAGATCAGTATTTTCTCCTCACGGATCCTGAGTTATGATATTTTCCTCAGCTCTAGATGGatgtttcattacatttttttccattttcgcACAGTTTCCTCAGCGTGTGTTAGCTAGCGTTTATTGCTAACTAGCGTTGTGGGTGATTACagctcgttttttttttcctcatgttgtGGTTTTTAAAAGTATGGATGTGTTTTGTGCTACATCACCGCACCATTTCCATTGAGTTATTTGCGTTTTCACCCAATTTCCCTAATGTGAATGAATGCAACTTTCTATTTGCTTTTTCCGATTAGCATAGATGCTGCCCTCGTCCTCGTTCCTCTagcattaattattcattattcctCTATTCTACGCTTGTCCAGGAGTTGCTGTGTGTCGGGAGCAGCCGCTATCAGTGCTCACGCTTATGTACATAAGACGTGGCTACATTAGATATTTGAGGAACACCAACTCTAAcagtgggtgttttttttttttgttttgtttttttttctttttccctttcctCCCCCCTGATTATAATTGTcagaatttcttttttgtaCTAAACCACATCACTGCTGGATTGTTTTACACATTCTGTTTAACGAAGCACGCTTAGGCCAGAGGTTTATCTTTGGCAAGCTTATTATTTGAAGAcgttttaaagattaaaaaaaggaaaagaaaaaagaataaacgaTGGTCATGTGTATACACTGTAATGATACGTATGTGCAGGCGGTTCACTTTAAAGGTTTTCTGTATgcgtgaggggaaaaaatgtctgttttccTCATTTCACCATCTTAACTTCTCCATCCAGGTGTTTTGGGTTTAAGTTTTgcgaaaaaaaaatactttttgaaTTTTGCCAGCTGatgtttttagatgtttttttgttagatTCTTAAGGCACTTTTTTCGGGTGACTTCTTGAGTTCTTTTTTTGAGCTCGGActcaaagaaatatttttttctcctgaatGCATGAAAAAATTTGAAACCTAAACAAGCTAAAAGTCAATACTGCTTTCACAtttggccttttttttgttCCCTTTTTATATaagttagttagctgatactaGCTAGGAATGGTAAGagtgttgctatggttacagtgtgcacgagtgttgctatggttacagtgtgGTTATGTTACGTGCTCTGGGcagctattttcttttttttttttttttttttttttttgagggaaaaaaaaaa

Function

symbol description
rbm33 Enables RNA binding activity.

NR:

description
RNA-binding protein 33 isoform X1

GO: NA

KEGG:

id description
K25078 RBM33; RNA-binding protein 33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303603.1 True 6792 mRNA 0.49 20 28443778 28468852

Neighbor

gene id symbol gene type direction distance location
en2a en2 coding upstream 43637 28393936 ~ 28400141 (+)
LOC113540125 LOC108267475 coding upstream 183524 28253028 ~ 28260254 (+)
zbtb41 zbtb41 coding upstream 291273 28112849 ~ 28152505 (+)
pfn2l pfn2,pfn2l,LOC107681776 coding upstream 332771 28104505 ~ 28111007 (+)
LOC113539840 LOC108267776 coding upstream 374512 28065067 ~ 28069266 (+)
rnf32 rnf32 coding downstream 89426 28558278 ~ 28588619 (+)
LOC113540233 NA coding downstream 134053 28602905 ~ 28611157 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding downstream 185904 28654756 ~ 28666631 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding downstream 222244 28691096 ~ 28699416 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding downstream 247412 28716264 ~ 28722857 (+)
G72276 LOC108267477 non-coding upstream 321636 28114451 ~ 28122142 (+)
G72236 NA non-coding upstream 431319 28011744 ~ 28012459 (+)
LOC113540592 NA non-coding upstream 884351 27556085 ~ 27559427 (+)
G72336 NA non-coding downstream 96 28468948 ~ 28471765 (+)
G72378 NA non-coding downstream 106070 28574922 ~ 28578950 (+)
G72404 NA non-coding downstream 150972 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding downstream 154388 28623240 ~ 28627973 (+)
G72422 NA non-coding downstream 182562 28651414 ~ 28651621 (+)
insig1 insig1 other upstream 60356 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 105605 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1037380 27384807 ~ 27406398 (+)
gng7 NA other upstream 1562308 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2067952 26353189 ~ 26375826 (+)
gng5 NA other downstream 289693 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 323995 28792847 ~ 28797159 (+)
G72873 NA other downstream 405504 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 712915 29181767 ~ 29196149 (+)
asip2b NA other downstream 1151141 29619993 ~ 29623797 (+)

Expression


Co-expression Network