LOC117597064 (phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649)


Basic Information

Item Value
gene id LOC117597064
gene name phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5919643 ~ 5928583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303604.1
AGGAATTGTCTGGAGGCGTTACCGGCGTGGCTGAGTGACAGCAAGAAGCTGGAAGTGTTAGACGTCAGTCATAACTCCATCAGAGAACTGCCCCAGTGgttgttCTGCAGTAGCAGTTTGAGGAAAGTCCTGGCAGGTCATAACCGTCTGCAGCGTCTGCCTGAGCGAGTGGAGAAGCCTGTGGTCGAGGTTTTAGACGACCAGCTAGTTGAGCTGCCGTGCAACCTCTTCCTTAAATCCAAcaaTTTAAGGTGCCTAAATGCCTCGGCCAATAAGCTCGAGAGTCTGCCGCCCTCCAGCCTATCAGACGAGAGCAACAGCATCCTGCAGGAGCTCTACCTGACCAACAACCACCTGACTGACAAGTGTGTGCCTCTGCTCACCGggcacacacacctgagagtcCTGCACATGGCCTACAATCACCTGCAGACCTTCCCTGCCagtaaaatggcgaagctggaggagctggaggaagTGGACCTGAGCGGGAACAGACTGAAGGCCGTGCCCACCACCATCCTGAACTGCAGgcgcatgcacacactcatcGCCCACTCCAACACCATCGAGGTTTTCCCTGAGGTCATGCAGCTCATGGACATGAAGTGTGTAGATCTGAGCTGTAATGAGTTGGTGGAGATCACACTGCCTGAGAACCTGCCTCCTAAACTGCAGGAGTTAGACCTGACGGGGAACCCGCGGCTCAACCTGGACCACAAAACCCTGGAACAGCTCAACAACATCCGCTGTTTCCGGATAGACCCGCCCCCTACTTCCTTCTCAGCCAATGAGGCTGCAGGTGGGCCGGCCGTCTGGAGTCACGGCTACACCGAGGCATCAGGAGTGAAGAACAAactgtGTGTGGCAGCTCTGTCAGTGAGCAGTTTCTGCGGCAGTAGAGAAGCTCTGTACGGGGTGTTTGATGGAGACAGGAATGTGGAGGTGCCGTATCTCCTGCAGTGCACCATGAACGACATCCTGGCCGAGGAGCTGCACAGAACCAAGAGCGAGGAGGATTACATGACCAACACGTTCCTCGTCATGcagaggtga

Function

symbol description
phlpp1 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Orthologous to human PHLPP1 (PH domain and leucine rich repeat protein phosphatase 1).

NR:

description
PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303604.1 True 1056 mRNA 0.55 7 5919643 5928583

Neighbor

gene id symbol gene type direction distance location
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding upstream 18228 5829806 ~ 5901415 (+)
LOC113547280 phactr1,LOC108267725 coding upstream 94714 5783658 ~ 5824929 (+)
LOC113547279 tns3,LOC101063620 coding upstream 364977 5506701 ~ 5554666 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding upstream 453524 5449482 ~ 5466119 (+)
LOC113547281 LOC108267848 coding upstream 485923 5431236 ~ 5433720 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding downstream 63345 5991928 ~ 6009784 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding downstream 86337 6014920 ~ 6037232 (+)
trnat-ugu_1 NA coding downstream 210717 6139300 ~ 6139372 (+)
foxq1a LOC108268192 coding downstream 233570 6162153 ~ 6163840 (+)
foxf2a LOC108267118 coding downstream 242446 6171029 ~ 6177159 (+)
G60036 NA non-coding upstream 20653 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 65755 5853669 ~ 5853888 (+)
G60029 NA non-coding upstream 76569 5842775 ~ 5843074 (+)
G59993 NA non-coding upstream 192202 5726602 ~ 5727441 (+)
G59990 NA non-coding upstream 193975 5725446 ~ 5725668 (+)
G60232 NA non-coding downstream 279519 6208102 ~ 6208314 (+)
LOC117596998 NA non-coding downstream 349022 6277605 ~ 6295446 (+)
G60267 NA non-coding downstream 367408 6295991 ~ 6296234 (+)
LOC117596997 NA non-coding downstream 372742 6301325 ~ 6305562 (+)
G60312 NA non-coding downstream 451662 6380245 ~ 6380462 (+)
LOC113547291 LOC108268023 other upstream 323418 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 527814 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 729930 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 904830 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 963176 4947137 ~ 4956467 (+)
trnat-ugu_2 NA other downstream 214949 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 666543 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 755753 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2127473 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2766769 8695352 ~ 8724440 (+)

Expression


Co-expression Network