LOC117597065


Basic Information

Item Value
gene id LOC117597065
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6778356 ~ 6779988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303606.1
TCCTACCTGCTGGACAATTCTGTCCACAAACTAGAGGACACATTCCTCAGATGTTTTGTGGAGTTGTCGAGGTTGAGAAAGAGCTCTGAAGTTCAAGGTGGCATCAGCAAGGATTCTCTCCTCCTGGCCCTGATCGAATCAGCTACAGACATCAATCCAGAATTCACCATCAGTCAACAGAACgacgCCCATGAATTCCTCTGCCACTGTCTGACCCAAATGGAGGAGTCTGGGCGATGGCTGGGTTGGCAAGAGGATGTGGACCCTAGATGCCCAGTCAGGGCCAATTTCAAGTTCAAGATGAGGAACATTATAACATGCTCCAGCTGTGGATCCCAGCAGAACAAAGTGGAAGTGTTTAATCACATCTCTCTGCCCCTGGTGCACAACTCGGTGGACCAGTGCCTCTATGACATAGTTAATAACCCGACAGTGTTAGAGAGTAAATGCAAGGTGTGTGGAGGAGAATGTGCCAACTCCAGGTGGACGTTCCACACTCTGCCCAGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303606.1 True 510 mRNA 0.50 5 6778356 6779988

Neighbor

gene id symbol gene type direction distance location
LOC117597185 NA coding downstream 316 6775979 ~ 6778040 (-)
LOC113547256 LOC108267788 coding downstream 165514 6602800 ~ 6612842 (-)
mylk4a LOC108268043 coding downstream 218030 6518463 ~ 6560326 (-)
trnak-cuu_3 NA coding downstream 597397 6180887 ~ 6180959 (-)
ripk1l ripk1 coding downstream 792141 5972624 ~ 5986215 (-)
LOC117597066 NA coding upstream 7 6779995 ~ 6789815 (-)
LOC117597067 NA coding upstream 15097 6795085 ~ 6798486 (-)
LOC117597003 NA coding upstream 30141 6810129 ~ 6812432 (-)
LOC117597000 NA coding upstream 57491 6837479 ~ 6868065 (-)
LOC117597001 NA coding upstream 69786 6849774 ~ 6854214 (-)
G60503 NA non-coding downstream 136171 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 176130 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 334541 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 383285 6394865 ~ 6395071 (-)
G60328 NA non-coding downstream 388279 6389703 ~ 6390077 (-)
G60672 NA non-coding upstream 5339 6785327 ~ 6792952 (-)
G60669 NA non-coding upstream 98656 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 450666 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 462137 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 661274 7441262 ~ 7538818 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 818811 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1284317 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1691999 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1833335 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2130476 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 101394 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1672622 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1791508 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1859480 8639468 ~ 9528825 (-)
G61478 NA other upstream 2203246 8983234 ~ 8984453 (-)

Expression


Co-expression Network