LOC117597066


Basic Information

Item Value
gene id LOC117597066
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6779995 ~ 6789815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303607.1
ATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCTGTACCTGTGACACCTGCAGAAAGCgctcaaaacacacaacagagaCGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTACAGAAAGCGGCTCAAAAACACCAACAGAGACGCCTGGAACTAGTGAGAAATccacagagaagaagaaggatggTGCTAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAAGAACAAGGTGCAACCTGCATCATTTACAGAAGGCTCAGAAACTCCAAAAGAGACTCTGCAAAATGTCTTTGTGAAACTATCAGCGGGGACCATGCCAGGGCAACTCTctaaaacaaagaagaagacCTCGACTAGCCGCAATGAGAAAAGTGCAGAAAGGAAGCAGGTAAGTGTGAAGCCAGCCTCCAAACTCCCAGGGAAAAAATGCATACAGGGCAAAGAGGCCGGTGTGAAGATAAATTTACCAAGCTCGATGAGGATCTCTGCTATgaaggaggaaaggaagaagACAACACAGTATGGGCAAGAAAAGAAGCCTACAGAAAGGAAGGAGACGACCTCAAATAGGCTTAatatgaaaaaagcagaaacGAAGCAGGTCAAAGAGGCCCATGTGAGGACCACTGCgatgaggaaagaaaaggaggaaaagaggacAACAACCCTGCATGGCCAAGAAAAGAAGACTGCACAAAGGAAGGAGACGACTTCAAATAGGCCTAATATGAAAACATCCGAAACAAAGCCGGTCATTGTGAGTCCTATCTCAAAACTCCCAGGGACGAAACGCATAGAGGTCAAAGAGGCCCATGTGAGGACAAATTTACGAAGCTCAGCGGGGACCACTGCaatgaggaaagaaaaggagaaaaggaaggAGATGACCCTGCGTGGCCAAGACaggaaggaggaaaagaaagaaatgaccCTATTCAAGTCGGAGGATGAAATGGCAAAGTTGATGGAGGTACTGATGGAGTTAGCCTTTTCTTCTTACATGGAATACAAGAAAAGGGTGAGAGATCCACATGCATTCAGTTCCAAAAAGATGATCCCTGAGGGAAACAGAAACGGCACGACTCTGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCAACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCGACTCTGTCTGAGGGAAACATGAAGAGCCCGATTCTGACTCCGTCTGAGGGAAACATAAACAGCacgactctgactctgactctgccCCCCATCACAGACAAGCAAGAGCTCACTGGCGGGTTGCCTAATTTTGGAAACAACTGCTACGTTAACATAAGTCTGCAGTGTCTGTTCACAGCTGAGTCTTTTTTATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303607.1 True 1440 mRNA 0.47 10 6779995 6789815

Neighbor

gene id symbol gene type direction distance location
LOC117597065 NA coding downstream 7 6778356 ~ 6779988 (-)
LOC117597185 NA coding downstream 1955 6775979 ~ 6778040 (-)
LOC113547256 LOC108267788 coding downstream 167153 6602800 ~ 6612842 (-)
mylk4a LOC108268043 coding downstream 219669 6518463 ~ 6560326 (-)
trnak-cuu_3 NA coding downstream 599036 6180887 ~ 6180959 (-)
LOC117597067 NA coding upstream 5270 6795085 ~ 6798486 (-)
LOC117597003 NA coding upstream 20314 6810129 ~ 6812432 (-)
LOC117597000 NA coding upstream 47664 6837479 ~ 6868065 (-)
LOC117597001 NA coding upstream 59959 6849774 ~ 6854214 (-)
LOC117597068 NA coding upstream 79555 6869370 ~ 6912573 (-)
G60503 NA non-coding downstream 137810 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 177769 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 336180 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 384924 6394865 ~ 6395071 (-)
G60328 NA non-coding downstream 389918 6389703 ~ 6390077 (-)
G60669 NA non-coding upstream 88829 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 440839 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 452310 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 651447 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 693306 7483121 ~ 7483703 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 820450 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1285956 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1693638 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1834974 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2132115 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 91567 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1662795 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1781681 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1849653 8639468 ~ 9528825 (-)
G61478 NA other upstream 2193419 8983234 ~ 8984453 (-)

Expression


Co-expression Network