LOC117597067


Basic Information

Item Value
gene id LOC117597067
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6795085 ~ 6798486 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303608.1
atggagtctaccgcgtcgccaaacaggATGACGGGGCACTCTGGAAAAGGGGAAGGAATATTTTATATGGTAATAGGAAGATGCAAGAAGCAATTAGAAAGGAAGAGGGTTGTCCCAGAAGTGAGTTTGAAGATGTATGAGAGATCGTTGGAGAGGGTGAagagttttaaatttttagGTGTTTTTTTGATACGAAACTTACATGGGCTGAACATAAACAAAATGGTTGAGAaatgtcagaaggtgttaaatGTCATGAGATGTCTAAGTGGAGTGGAATGGGGGGaaagtttttcttcattaaaaactaTTTATGTAGCACTGATCCGGTCTGTATTTGATTATGGTAGTGTGGTATATGATTCAGCATCAAAAAACTTGTTGGAAAAACTCAATAAAATACAAGCTCAGGCTATGAGACAGTGTTGTGGAGCAGTAAAGAAGACACCCATTCCAGCTTTACAAGTCTTGTTAGGAGAGATGCCACTAGAAATTAGAAGGAAACAATTAATGATCAACTACTGGGCTAACCTCCAGGGGCATAAAGAAGAACATCCTACGAAAATGGTCTTACAGAAGTGCTgggaacaaaacaaaaggtgTAGAATAAGTTTTGGGTGGAGGAGTAAAATATATGTAGAAGAAATGCAGCTAAATAGTATCAAGATATGCCCAACAGTTTTAATTCTGGAATATGAACCATGGGTTTATGTGACACCTCAAATAGATTTGTATATGTTGGAAgtcaaaaaagcagaaagagaagTAGACCTGTCATCTGCATTTTCAGTATATGTTAGAAACCAGTATACCcagtatatacaaatatatacagatgGATCAAAAGACCCAGAGCGTCAGACAACTGGGGCTGCTTTTTTAGTTCCAGGCAGTGGAATCAAGGGAATAAAGCGAACTTCAAATCATTTGGCAGTCTATACTGCAGAAATGGTAGCAATTCTTTTGGCATTGCAGTGGGTAGAGgaacataaacctgtgaatgttttaatttgttctgACTCAGTATCAGTCTTAAAGAGTTTGAGATCTTTTAAATCTAGCCACCAAGATATTCTCTTTAGTATTTTACAAATACACTCAAGAAttgttcaaaataatatttcagtcaGTTTTATATGGGTTCCTGCACACATAGGAATAAAGGGAAATGAAGAAGTGGATAAATTAGCGAAACAAGCATTACAGAGAGAAATCGTAGAGATTGAAGTTCCGTTAAGTAAGTCAGAGATTAAGGTTTTAATTTGGAGTAAAGTGATTGAAGAATGGCAAGTAAAGTGGAATAATGGGAAAAAGGGAAGATTTTTTTACAGCTTAATTAATAAAGTAGGTCAGAAGATAAAATGTATAGGTAAATCAAGGAAAGAAGAGGTTATTTATAATAGAATAATGTTAGGTCATTCAAATTTAAATAGCACACTTAAAATTATAGGGAAACATCCAAACGGATTATGTGAACAATGTCATGTTGAAGAAACAATACCTCATGTGATTCTTGAACGCTTTTTGGACTATGTGTTGGACCGTGTTGAACAGTATGCTGTATCTACAAGATGTTATAAAGGAAAATTGGGTGAACAAAAAATGGCAGACCTTCCATTGGAAGGGATCACCCCTGACCTACCTCCTTTTACCAATGTAGGAGTGGACTTTTTTTGGGCCCATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303608.1 True 1686 mRNA 0.36 5 6795085 6798486

Neighbor

gene id symbol gene type direction distance location
LOC117597066 NA coding downstream 5270 6779995 ~ 6789815 (-)
LOC117597065 NA coding downstream 15097 6778356 ~ 6779988 (-)
LOC117597185 NA coding downstream 17045 6775979 ~ 6778040 (-)
LOC113547256 LOC108267788 coding downstream 182243 6602800 ~ 6612842 (-)
mylk4a LOC108268043 coding downstream 234759 6518463 ~ 6560326 (-)
LOC117597003 NA coding upstream 11643 6810129 ~ 6812432 (-)
LOC117597000 NA coding upstream 38993 6837479 ~ 6868065 (-)
LOC117597001 NA coding upstream 51288 6849774 ~ 6854214 (-)
LOC117597068 NA coding upstream 70884 6869370 ~ 6912573 (-)
LOC113526837 NA coding upstream 158286 6956772 ~ 6959079 (-)
G60672 NA non-coding downstream 2133 6785327 ~ 6792952 (-)
G60503 NA non-coding downstream 152900 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 192859 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 351270 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 400014 6394865 ~ 6395071 (-)
G60669 NA non-coding upstream 80158 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 432168 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 443639 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 642776 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 684635 7483121 ~ 7483703 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 835540 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1301046 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1708728 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1850064 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2147205 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 82896 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1654124 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1773010 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1840982 8639468 ~ 9528825 (-)
G61478 NA other upstream 2184748 8983234 ~ 8984453 (-)

Expression


Co-expression Network