cacna1eb (LOC108267309)


Basic Information

Item Value
gene id cacna1eb
gene name LOC108267309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7937514 ~ 8008440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303615.1
GGATGAGTGTAACACAGATCGCCATGGTAACCGATTTTCCCGCGGCCCGATCTGCCTGGAGGGCGAAAAGAGATAAACTGCTCCTCTAAAAAGTACGTGGGAGACGGTAGTGGATCCGGAGGGGAGGGGGTGGGTGGAGGATGGCAACTGTTCCACCACCGTTCCAGCCTTTCCTTGCCTTCCTGAGTCTTTCTGAGTCtttctgtgctgctgctgctgctgcttctcgCGCCCTAAGCGTGAGACCAACGTGCAGGATTTTCGCCACCTCTCGACTGTTTTGCATCACGGAAAACTACGGGCGGGAGATGAAATGAGGTTTAGTGCAATGCAATTGGAAAcggaaatcattttttttctccaaggttttgcatgcatgcatgaCAAGAgatatcacattattatttgAGCTGGTTTTCTGGTTGGAAAATTCTCGCGCGCACCGACAGACACCAGGGTTTGTAATTAATCGGCTCGAGCCGACGGGAAAGGGGAGATGCACCTGCGCCTCACGCGCCGCCCGACATCTGATGCATAGCCAGCAACTTTTTTTGGGAGAAAAGTTCCTGGAATGTAAACAGCAGGAGCGGAGCACCGATCTGACCTCGCTTTTCAGAAGTGGATGCGCTTGGCATGGAGTGAGAGCGGCATCGCGCTCCTTCCTTGCACTCGCTCGCTTCACGTCCGGTCGGCATGGTCCGCTCCGGACAGCACGCGCCGAACGGGACGGGCTCGGGCTCGGGCGCAGCAGGCTCGGGCGCAGCAGGCTCGGGTGCGCGCGCAGACGGTCCCGGTAATGAGGCACCAAAGAGCATCAAAGCGCGGCGCGCGAAACCTCCACCTCCGGGCCGCCGGAACTGTCTCACGGCAAACAGGTCGCTGTTCATCTTCGCAGAGAATAACCCGGTGAGGAAGTACGCGCGGAGGATCATAGAATGGCCTCCATTTGAGTACATGATCCTGGCTACCATCATCGCCAACTGTGTCGTTCTGGCTCTAGAGCAGCATCTTCCCGGTGAGGACAAGACGCCCATGGCCAAAAGACTGGAGAAGACAGAGCCCTATTTTATTGGGATCTTCTGTTTTGAAGCCGGCATCAAGCTGCTAGCTCTTGGGTTTGTTTTCCATAAGGGCTCATACCTGAGAAATGGCTGGAACGTCATGGATTTTATTGTCGTACTAAGCGGGATCTTGGCCACTGCTGGAGCTCACATGAACATCCCAGTGGACCTGAGGACACTGAGAGCAGTGCGAGTCCTGAGACCTCTCAAACTCGTCTCAGGAATTCCCAGTTTGCAGATCGTTCTGAAGTCCATCATCAAGGCGATGGTGCCTCTGCTGCAGATCGGCCTCCTCCTGTTTTTCGCTATCCTGATGTTCGCTATCATCGGCCTGGAGTTCTACAGTGGCAAGCTGCACCACACCTGCCTTCCTCGACCCGACATCCTCGATAACGAGACAGTGGACTCCTCCGAAGTGGAGTTTGCCTGTGGTGTGCGCAGGTGTCCGGAGAAATACGACTGTAATGGAACGTGGATTGGGCCGAACGATGGCATCACTCAGTTCGACAACATCCTCTTTGCAGTGCTCACAGTGTTCCAGTGTATCACCATGGAGGGCTGGACTGCTGTTCTCTACAATACTAATGATGCACTGGGTCCCACGTGGAACTGGATGTACTTCATTCCCCTCATCATTATTGGCTCCTTCTTCGTGCTAAACCTGGTGCTTGGTGTCCTTTCAGGCGAATTTGCTAAAGAAAGAGAGCGTGTGGAGAACCGGCGAGCCTTCATGAAGCTTAGACGACAGCAGCAGGTAGAAAGGGAGCTTAATGGCTACCGTGCATGGATTGACAGAGCAGAGGAAGTGATGCTCGCAGAGGAGAATAAAAACTCTGGAAGGTCTGCATTAGAGGTGTTGAAGCGAGCCACGAGCAAGAAAAACGCAAGGCGTCGTGGAGAGGACAAATATTCAGAAATCGCAACAGTTGGTGGTCCCAGGCCTCCGGTGAACATCCGCACTGTGAGAAGGGGTCCTGCTGCCTACCTGCGCCGTAAAGAGCGCATGCTGCGCTTCTCCATCCGCCGTATGGTCAAGACGGACAGCTTCTACTGGATAGTGCTCAGCCTCGTGGGCCTGAACACCATCTGCGTGGCCATCGTCCACCACAACCAGCCCGAGTGGCTCACCGTGCTACAGTACTATGCAGAGTTCGTGTTTCTGGGACTGTTCCTGGCTGAGATGTTTCTGAAGATGTACGGTCTTGGCTTCCGCCTCTACTTCCACTCCTCTTTCAACTGCTTTGACTGCGGGGTGATCATCGGCAGTATATTTGAGGTGGTCTGGGGATTCTTTAGACCTGGAACGTCCTTTGGGATCAGCGTGCTTAGAGCTTTGAGACTGTTACGAATCTTTAAAATAACCAGGTACTGGGCCTCTTTAAGAAACCTGGTTGTGTCTCTGATGAGCTCCATGAAGTCCATCATCAGCCTCCTCTTCCTGCTCTTCCTGTTCATTGTGGTTTTCGCTCTGCTCGGGATGCAGCTGTTTGGTGGCAGGTTCATCTTTAAAGATTACACTCCTGCCAACTTTGATACATTTCCAGCTGCTATCATGACTGTCTTTCAGATTCTGACGGGTGAAGACTGGAACGAGGTGATGTATAACGGGATCCGCTCTCAGGGAGGCGTACAGTACGGCATGTGGTCCTCCATCTACTTCATTGTGCTCACGCTGATTGGTAATTACACACTGCTGAATGTCTTCTTGGCCATCGCTGTGGATAATCTCGCCAATGCACAGGAGCTTACGAAGgatgaagaggaggaagaggagttTTTCAATCAGCGGTACAAGGGCCGGGAGTTTGGCCTTTCTGAACGGAGGCGCAGGCCGTATCTCTACAGAAAACGAGCCATCCATAGAGGCAGGCCGAACCCAGCCGAGGCAGAGGAAGAGACGGTGGGGGCGAAAACCAGTGAGGAGCAGCCTTCTAATGCCTTTGCCAACCGACGTGACAGACGCAACAAGATCAAGATGTCTGTGTGGGAGCAACGTGCCAACCAGCTGCGCAGACGGCGTCAGATGGCGAGTCGCGAGGTTCTGTTTGACAGCCCCACTGAGGACCCTATGGGCACACCGATGAGTGGCCACCACCAGACGCACACCACTGTCCCCTCTGCTGAAGCCAGTCCAGCACACCTGCCCGAGTCACCAATGTCAGTCGTGATGCCTTTACCTGAACCACCCATGTCTATCTCGATCCCACTCCCTGAACCGCCTGAATCTGAGCCCGTGTCTCTAATGGGCTCTGGGATGGAGGACAGACCCTCAGGCACCGTCCATCGCTCCAATACGGACAGGAGGCACCGGGTGGCACGAAAGTTCCGGGCTGCTGCGGCAGCAGGCGTCGTGCAGGGTGGCCGACACCGGAGACACAGGCATCGTGAGTCCAGGACAGAGATTAAAAACACAGATGAGGAACAGTTTCAGGAAGGAGGAGATGACGGAGAGGCTTCCCAGTCCAGACAGAGCTTGCTGATGGATGAGACTGACCCGATTATGTCCCATCAACCTGACGAGGAACAGCAAAGggacagtgtgtgtgaggtttcaGTGAGATCTGATGTGGCTGAGGGCGAGTCTGGTCTTCAGTGCACTTGCACAGCTCTGAGCGAAGATAGAGAGGCCGAGTCCTGCCTGCAGCACCGGGAAGAAAATACGCCAGAGCTTAATTACCTCTCAGGGGAAGCCATCGATAACGAGAACAATGCCTGCTATTTAAACCAGGGGGAGTCGATGACGGAAGCGAGCATTATGAGAGAGATGTCTGCCCAGCCTCTTTTAGAGTTAACGCCAATGACTGGTAAAGTAAACGGCTACGTCATCTTTACCGTCATTAACTATGCTGTTCATTTATCAGCTTTAAGGATGTGGAAGCTTCTCACTCAGAAAAGACCGGTAGgggacgacgatgatgatgatgatgatgatgatgatgacatggATGAAGATGCCCAAACAAAAGTCGCCAAACCTGAGGCACCCGATAGCATGTTCATTTTCAAGAGCAAAAACCCGATCCGCAGAATTTGCCACTATGTAGTGACACTACGCTACTTCGAGATGACCATTCTTCTTGTGATCGTGGCTAGCAGCATTGCTCTGGCCGCAGAGGACCCCGTGTGCACCAACTCTGAGCGCAACCGGGTTCTTCGTTACTTCGATTACGTTTTCACGGGTGTGTTTACATTTGAAATGATCATAAAGATGATCGACCAGGGCCTCATTCTGCACGACGGCTCATATTTCCGAGACTTGTGGAACATCCTGGACTTCATCGTGGTGGTTGGAGCTCTCATCGCCTTTGCTCTTACGAATGTTATGGGAAACAACAAAGGCAGAGACATCAAGACTATTAAGTCTCTGCGAGTGCTGAGAGTTCTCCGGCCTCTCAAGACCATCAAAAGGCTCCCAAAGCTGAAGGCCGTGTTCGATTGTGTGGTGACGTCCCTGAAGAACGTCTTCAACATCCTCATCGTCTACAAGCTCTTCATGTTCATCTTTGCCGTCATCGCAGTTCAGCTGTTTAAAGGAAAGTTCTTCTACTGTACAGACGGCTCAATGGGCACACAGAGAGAATGCCAaggcTACTACATCGATTACGGGAGAGACAGGAAGGAGGTGAAGAAGCGGGAGTGGAAGAGACACGAGTTCCACTATGATAACGTGATGTGGGCGCTGCTCACGCTCTTCACCGTGTCCACAGGAGAAGGCTGGCCGCAGGTTCTCCAGCACTCAGTAGACGTGACCGAGGAAGATCACGGCCCGAGCCGAGGCAACCGCATGGAGATGTCCATCTTCTACGTCGTGTACTTTGTAGTCTTCCCCTTCTTCTTTGTCAACATCTTCGTcgccctcatcatcatcacattcCAGGAGCAAGGGGACAAAATGATGGAGGAGTGTAACCTGGAGAAAAATGAGAGAGCCTGCATAGACTTTGCTATCAGTGCAAAGCCTTTTACACGTTACATGCCCCAAAACCGACAGACTCTTCAGTACCGACTGTGGCACTTTGTCGTCTCGCCGTCGTTTGAGTACACAGTCCTGGTCATGATCGCGCTCAACACTGTGGTCCTCATGATGAAGTATCACTCGGCTCCGGCTGCCTATGACATGGTCCTGAAGCACCTGAACACGGCCTTCACTGTGCTCTTCTCCCTGGAGTGCATCCTCAAAATCATGGCCTTTGGCTTCATGAATTATTTCCGAGACACTTGGAACATCTTTGACTTCATCACTGTCCTCGGCAGCATCACTGAGATCATTGTAGACTTGCAGTCTGTCAACACTTTTAATATGAGTTTTCTGAAGCTGTTTCGTGCAGCCAGGCTCATTAAGCTCCTGAGGCAGGGCTACACCATCCGAATCCTCCTCTGGACCTTCGTCCAATCCTTTAAAGCGCTGCCGTACGTGTGTCTGCTCATTGCTATGCTCTTCTTCATCTACGCCATCATTGGCATGCAGGTGTTTGGAAACATTAAGTTGAATGATGAGAGTCATATAAACCAGCACAACAACTTCAAGACGTTTTTCGGCGCTTTAATGCTGCTGTTCAGGAGTGCAACAGGAGAGTCATGGCAGGAGATCATGCTGTCGTGTTTAGCTGGTCAGGAGTGTGAGCCCGACCCTTCCATCGCTCCACCCTTCATCTCTCCAGATCACGAAGGCGGCTGTGGCACTGACTTCGCCTACTTCTACTTTGtctccttcatcttcttcaGTTCTTTCCTGATGCTAAATCTTTTTGTAGCTGTGATCATGGATAATTTTGAGTATCTGACACGGGATTCCTCCATCTTGGGACCACACCATCTGGACGAGTTTGTTCGGATCTGGGGGGAGTATGACCGGGCAGCATGTGGTCGTATTCATTACACTGCCATGTACGAGATGCTGACCCACATGTCGCCTCCTCTCGGCCTGGGGAAGAAGTGTCCCGCTAAAGTAGCCTACAAGAGGCTGGTACTGATGAACATGCCTGTGGATGAGGACATGACCGTCCACTTTACTTCCACACTGATGTCCCTGATCCGCACCGCTCTGGATATCAAAATCGCCCGAGGAGGAGAAGACCGGGTGCAGCTGGACACTGAACTGCAGAAGGAGATCAGTGTGATTTGGCCTCATCTCTCCCAGAAGACCTTGGACCTGCTGGTGCCGATCAATAAAGacacagacatgaCAGTGGGTAAAATCTACGCCTCCATGATGATCATGGATTACTTTAAACAGAGCAAAGCAAAGAAGTTGAGGCGGCAGGCTGAGGAGCAGTCGAGCAGTCCTGCCCTTCCTCTCATATCTCACAGCGCAGGCTCGGCTCTGACCAGTGGTGGTTTCGTGGCCCTGAGTCCCATCTCACCCCAAGAGCTCTTAATGCAGCCGGCGTCACATCAAGGGGAAGACAGTGAGGACTATCAAGTGTCCATGGCAGATGAGCAGGAGATAGATGGATTGTGGGAAGAGGAACAGCCACCTGAGCGTCTGTACCGACCAAGACACAAGAGTTACAAAGCTGCGGTGTCCCATTCAGAGCATCAGGCAGAACGAGAGCGAGGGCGATCTAAGGAACAGCGCCACCTGCTGTCCCCAAACACGTCCCGCTTCAACTCAAACGAGAGGAGTTCGAAGTCCTGCTCTCGTTCTCCCAGTGAGGAAAGACGACATGGACACACTCGGCAGggaAACAGCTCAGACAGCCCCGTTCCCTCCACCTCAGAGTCGAGCACACCGAGCGCCAGGCGTCGCCTCTCGCAGACACCAACTCACTCGCACCCACACGTCTCCTACTCACCGTTAGTGTGCCACACTCAGCCTTCCTCCCAGGCggaagatgaggaggaggaggagcgagGAGGCGCTCCCATTCTGGGCTGCTGCAGCAATGCCTTATGGGACGAAAACGCAGAAGAGGAGGAAATACAAGTGGGCGAGGGAGAGGACGAGACAGGGCACATTGAAGGGGACGAGTATCTGGGCTCGGGCGCCCGTCGGTTCCCTTCTGAACCCTACCTCGCcctgcaggaggaggagcacAGCCCCGATTCCTCAGCCATGGAGACTCTGACGTTTGAGGCTGCTGTGGCCACCAGCCTGGGCCGCGCCAACACCATCACGGCCTCCATGCGCACGCGCGCACGCCTCGGCTGGCACGTCCCCAACGGGCACTTCCGCAAACGCCTGGCACAGAGCGTCTCCATCTCCGCGGGCGAGCCTCTCAGTGACACGGAGGATGACAAATACTAAGCACTGACCAGAAGAACTCTGGAAAAGGACGCTGATCCCTGCGACAGCAGCATCTGAGCTGCGTTGTTGAATATACTGTACGTACAAGTCAAATGTGATCATTAAAATGGAGGAGTGCTAAGATTTTCACCTTTTTTAACATATAAGCAGCTGTCTTGTCTTGTTTCTAACAAAACACTCTGAGAGttcaagggagaaaaaaaaaaaccactgtaCATTTGAAAACCAGACTAAAGAGCTTCATCGTCTGTGGGGGATAATGAACTCAGACTATCGCTGTTTTACACTCTGAAATGCTGATCAATTACACTTTCTTTCGCACGGTAAATGGTTTCCAAACAAATTAGGCTACGTGTTGCAGAATGAATGTAAGGAAATGCAATTCAGTTCCATGAATTCAGTTCTACTGGCTCATTCATTTTAACCAATGTTTACTTTATCGATGACACACCGATGCACAAATCGCGTGCAACACCTTGCAATGACATATTTTTGTGAGCTCAGAATTAAAGCCTAAATGCATCTACTGTGTTGGATTCATTCCGATTTCTAAACATTTGTACAatctgagaaaataaaagaaagtaaCTCGA

Function

NR:

description
PREDICTED: voltage-dependent R-type calcium channel subunit alpha-1E-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303615.1 True 7901 mRNA 0.52 46 7937514 8008440

Neighbor

gene id symbol gene type direction distance location
LOC113526772 ttc39c coding upstream 126946 7790827 ~ 7810568 (+)
LOC113526636 osbpl1a coding upstream 151338 7743431 ~ 7786176 (+)
LOC113526517 znf521 coding upstream 262090 7543681 ~ 7675424 (+)
ss18 ss18 coding upstream 406839 7482228 ~ 7530675 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding upstream 495260 7423560 ~ 7442254 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding downstream 3530 8011970 ~ 8014519 (+)
abcf3 abcf3 coding downstream 7973 8016413 ~ 8031250 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 25621 8034061 ~ 8053897 (+)
LOC113526329 LOC108267642,LOC108436873 coding downstream 76706 8085146 ~ 8101065 (+)
znf830 NA coding downstream 93965 8102405 ~ 8104017 (+)
G60931 NA non-coding upstream 150879 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 235416 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 270295 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 327324 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 451363 7485766 ~ 7486151 (+)
G61096 NA non-coding downstream 101038 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 109268 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 209654 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 283488 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 286931 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1233168 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1340913 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1793712 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2341289 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2545685 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 47616 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 686912 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 716105 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 886030 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1750020 9758460 ~ 9774049 (+)

Expression


Co-expression Network