LOC113540574 (stam,LOC108267818)


Basic Information

Item Value
gene id LOC113540574
gene name stam,LOC108267818
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23054500 ~ 23103788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303646.1
GTGCAGTTTTACACACTGAGCTATAGTGAGCCTCTCGGCTTTCACCTGGTTTCTCTTTACTATTCGGCGCCTAGCTGGAGGTTCTCTCGTAATGTAAAAAGCAAGTGGGCAACACACAGCCTGCacactcctccacacacacactcctccacacacacctcctgcacactcctgcacactcctccacacactcctcctgcTGCGCCTTGGGCATCCTTCTCTCACCTCGGACCCGACTGCATGGAGGAAGAGAATTCCTGATATTTTGAAGTCTGTGTGCTGCTTGACTGGACAGTTTGTGGGGATTGCTGCAGCCCTCGTGTCCACCTCCTGCACTCACTCCTCAGGTAAACAGTCCACAACCTGCGAGACAAATCCTTCTGGAACTTTCGACAGCTTTCAGTTTTTCACTTCGTGAGCCAGCATTAATTCTGTCATGCAGTTGATGTGAACTGACTCCAGCATCGTTAAAGCAAAGGTGCTTCTGCTTCATTCCACAATGAAGGACGACTTTACTGATGAGGAGGACGTGCAATCCTTTGGCTATAAACGGTTTGgtATCCAGGAGGGGAATGAATGTACTAAATGTAAAAACGACTGGGCACTAAGGGCAGCCATTGCTCTCCTGTACGTCCTGTGTGCACTGCTCACAATAGCTGTGGCTGTATTAGGATACAAAGtggTTCAGAGAATGGATGATGTAACTGAAGGGATGGAGAACTATGAAGGCAAAATTATTGCTGTAGAGACAGACTTGAAAAAGCTTGATGATCAAACAGGAGAGAAGTCAGAGAATGCCACAAATGAAATCCTATCATTCAAGGCAGAAATCCAGACATTACAGAACCAAATTAATGACATTGCCCTGAGCGCATCTAACAACAGGGCAGCTTTGGATGAGCTACGGGTTGTAGGTGAGGATATGCAAAGTGGCCATGTATCACTGAGAGACCTTCTAGAGAGCAATACCAACACCATCCTCACTGTCAACCGTACTCTAACGACATACAACAACTTGATTGGTGGACTGAAGTCAGATACAGAACGGCTCCAATCAGATCTTCAGGTACAGATAAGGGAACAGAGTCGCTCCACCCACAGCCTTAATATTCTTAACTTCACGCAGACTCAGCAAAGAAGTCTCATCAGCACCCTCCAGAGTTCAGTGGAGGATACCAGCCAGGCAGTCCAGAAGCTGAAGAATGACTACCAGAGCCTACAGCAGGTGGCCAGGCAGACCAAGGCAGATGCTGACTGGCTCAGAGAAAAAGTGCAGAACCTCCAGTTGCTGACTGCTAACAACTCAGCACTGACCCGTTCAAACAGTGATGCACTTGAGGACATAGCATCACAGCTCAGTTCACTGTCTGAGCAGATTCAGAATGCCTCAACTATAACAGACAATCATGACCAGAATCTGCGTGAGCTCATGGATCAACAGCGCGATCATGACAATGCCACCACCAACAGGTTTGACACTTTGGAGGCACGTCTGGATCGCAATGAGGAGGATATGGACCGCATCACAGGGAATGTGAGCGTTGCTACACAGCTGCTAGGCTCCATCAGTACTGACTTGAATGGTCTTCGCACCTGTACTGAGACAGTGACAAGGCACTCGGACCTGCTGCTGGCTCTCAACAGCAGCATTGTGGAAGCCAGGGCAGATGGCACTGAGCTCAAAACTCAGCAAGAAGAGCTTGCTGTCAGGCTTGACAAAGAAGTGAGCAGCCTCTCCATAGTCATGGAAGAAATGAAACTGGTGGACAGCAAGCACTCCCAACTCATAACCAACTTCACTATCCTTCAAGGTCCTCCTGGTCCTAGAGGCCCTCGGGGGGATAAAGGACCCCAGGGGCCTGCAGGAAAACAAGGTGAGAAAGGTGACAGTGGAGAAAAGGGTGCTCCAGGTGTGCCAGGGCCTAAAGGAGACAGAGGCCCCCCTGGAATTCCAGGGGTCCCTGGCTTCAAAGGTCCTCCTGGACCAAGGGGAAGCCCTGGGTCAAAGGGCTCAAGAGGATCAGGGGGTCGTGCTGGGCCTCCAGGGGAGAGGGGTGACCCTGGTTTACCTGGTCTTGCTGGCAGAGATGGTCAACCAGGTCCTCAGGGGCCTCAGGGGCCCCCAGGGCCACAAGGGCCAGTGGGACCTGCAGGACCACAAGGACCTCCTGGCCCTGCTGGTCCTATTGGTCTACAGGGACCACCTGGCCCAACTGGACCTCCTCCTCAACTGGCTAAACCTTTGCAACCAATAGGACCACAAAGCTCAATGTCCCGTCAAGTTTATGAACCTCCTCCCACCAGCACACCAGGATGCCCACCTCAGTGGAAGAGCTACAAAGCCAAGTGCTACTACTTTTCAGCTCCATCAGAGCGATTGAATTACGATGAAGcaaaagaaatgtgcaaaaataagaCTTCTACTATGCTTACCATCCACAATGAGGATGAACAGCTTTGGATTCGGAGGCAAATTGCAGGAAAGGGTTACTTTTGGCTGGGTCTTACAGATGTGGTAGAGGAAAACAACTGGAGATGGGTTGATGGGACCCTCCCCTCCTATACGAATTGGAAACCAGGCCAACCAGATAACTGGAGCCATGGCCATGAAGAAGGAGAAGATTGCGCAGGACTCATCCATGAGGGCAAaaaagaagaggGCCGAGCTCAGacttgtgttgttgtttttcctgtttatatCCCGGCGATGCCTCTTTTCACGTCCAATCCTTTTGATCAAGATGTTGagaaagcAACCAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATACTGGACATATGCGATAAGATAGGACAGTCACGCACCGGACCTAAAGAATGCCTTCGCTCCATTATGAGGCGAGTCAACCACAAGGATCCCCATGTAGCCATGCAGGCTCTGACATTATTAGGGGCTTGTGTGTCAAACTGTGGGAAGATCTTCCATTTGGAGGTGTGCTCACGAGAGTTTGCCAGTGAAGTTAGCAATGTCTTAAACAAGGGCCACCCAAAAGTATGTGAGAAGCTCAAGGCCCTCATGGTGGAATGGGCTGAGGACTTCCGAAATGACCCCCAGCTCAGTCTCATATCAGCTATGATCAAGAACCTGAGAGAGCAGGGTGTCACCTTTCCTGCTGTTGGCTCCCAGGCAGCAGAGCAAGCTAAAGCCAGCCCTGCTTTAGTGGCCAAAGACCCAGCAACATCCACAAccaagaaagaggaagaagactTGGCCAAAGCCATCGAGTTGTCTTTGAAGGAGCAGCGGCTGCAGAACCAGACCTCATTCTCTGGGCTTTACCCGAGCGCTAGCAGCCTTCTCACCTCCCACAAAGCCGAGGGAAGGAAAGTTCGGGCTATTTACGATTTTGAGGCAGCAGAGGACAACGAGCTAACCTTCAAATCTGGAGAGATCATCACCATCTTAGATGACAGtgacCCCAACTGGTGGAAAGGTGAGACATATCAGGGCGTGGGCCTTTTTCCATCTAACTTTGTCACAGCAGACCTGACAGCAGAGCCAGAGATGATGAAAACGGAGAAAAAGACAGTGCAGTTCAGCGAGGACATCCAGGTGGAGACCATTGAACCGGAGCCTGAGCCTGTCTACATAGATGAGGAGAAAATGGACCAGTTGCTTCAGATGATCCAGAGCGCAGATCCAACAGATAATGAGTCAGACGCCTGTGAGCTGCTCCAGCTGGAGGGTGCCTGCAACCAAATGGGTCCACTCATTGATCAGAAACTGGAAGAAATTGACAGGAAGCACTCGGAGCTGTCTGAGCTTAATGTGAAGGTGATGGAGGCACTCTCATTGTATGCCAAGCTGATGAATGAGGACCCCGTTTATGCCATGTATGCCAAACTGCAGAGCCAGCAGTACTACATGCAGCAACCCGGCACCTCACAGCAGGTATACCCAGGGCAGACAGCTGCAGGACAGTACGCTGTGGCTGCTACAGGGGTGCAGGGTTATAATGTTCCTGTGGAGCAGATTCCAGCCATGAACCAGGTCCCTGCTCCTTTACCAGGCCAACCGGCGCCCAGtgaTGTGCACATGTACATAGGCCAGGCGCCCATGTACAGTGCTCCTGCGGGCAGCATGGCTCCTGCTGAAGTGCAGCAGGCATACCAGAACACTGCCAGTGGACAGGCAGGCCTGACCCAAACTCCCATCTACACCTGTGCCAATCCCACAGACCCTCAACAGAGCCCTTACCCGGAAAAAGCCCTCTTATAGGACCCACATACACGGCTCTCGTCTCTCCAGTATACATACACACCCTTCTCATGAACAAAGAGGTGCAAGCTAACACTAAAACAACATGGCTACAGGGCACGGGAGCAGACTGATCCGCGCTCCTACATCATTGTCATTGTTTCTGATGAACATACACATGTCTATACACACTACATTCTCCCAGTAATGCACCCAGACAGTagaaaccacagaaacactcaGTCTGACCGAGTAAAAGACACCGAATATTGATTCACTACTGACTGGTTACATTATGCAATTTGAAGAAAGGCAGACAGGagttagtctctctctcactatctctctatctctatcttaCAGTCTCGCCCTCTCACTCTCTTGAAATATATGTCTTTCTGACtatctttctccctctctcgctatctctatctctcaagctacatctctctctcaatttCGCTCTAAATTGCTCTCTATCTTTATCTATTTCTCTCGATCCTGAtgtctatttctttcttttacattatgtcTCTATCTTGCTATCTATCTATAACTtatctccatctgtctctctatttctctacctcgctatctgtctgtctcgctgtctCCATCTTACCATTTTTGTTTCACCGTCTCTGTCTTTCAcaccctctgtctttctctgtctgtctctatctcacCATCTATGTCTCTCAAGTTCTATCTCTCTCGCACTCTTAAGTTATTTGACTGAGTTGGTGCCACCCTAATGCCTACTAAAGACTACACATTTACTTGTTTTGGAAAAGCTGAAACACAAATGGAGCATGCACATGTACATAATTTTCCTTTCTGTTATGGAACTTCTAACAGTCACAGGTGTTTGTTGCTACAGGGTTTCATAGGAGAACTTCAtttttccgtgtgtgtgtgtagaggtcaGTCTGCATACATAAGTGTAAGGTCTTCATGTGTCAGTAGTTCTGAAAAAGCATTGTAGCCATTCCACCTCTCCTGTGGGACTGTGTAGCACAGCACCAGCATGGTCCCTGACAGAGTGGCGCAGTCCGTACAGCAATCCCCGCAGTTCTCAGCAGGATGGCGCAGTCCATCTTCCTAGGGTCTTGAAGCATTTCTTTAACACAGTGTTAAATTGATTCTTAATTGTAgtatgtctttatttatttcgaCTGTCATTTTAAATGCACTGTACTTTGATATATGAGAATAAGGATGATATTCTGCTTAAAAATGTAGATGTGTATATATGAGAACCTGTGTTACAGCAGCTGCTCCTTCTGTTGAAAGAGCACAGTGAAAGGCATGTAGTAATATTACTCAGTGATGTTATGCACTTTTGATTTTGACTCACAGTCTCAAGTTTCAGCTCGCCTCAAgttgtaaaacattttaaccaCAGAAGGACTAAAGCGGCTAACtgaaaaattcaaatatttaggCACTGGGAATTTTAAGATTTCACTAGAACACTAAAATTGCCTTGTACATTTTGATATGTCTGATTCCCCTCCATCGAGAACCAgttgtgtatgatgtgtgtgggAATGATTGTAGTCCAATATCTCTAATATCactacatttttaatcattttgggATAAGATGGAGGCTGAAAGTGAGTTCATTAGGATGTTTTATTGGGATCAGAGTTTGTATCCTCTTTGCCCTGGTATCATCTGTGTACGTGGAATATCTAAATATTAAAGAGTTGCTAAAAGATCTTGACCTGGGGACAATGAGCCAGTTCCAGCGTGGTCCGCCGCTTtttacacacagctgtgatCCTGATATAAACTTTATTCACAGGGAGAATGATCTTTCCATGTTTTAAAGGTCCTTGGTGTATAAGTTCGGTTAAATGTACCTAGTTCTTTATGTACTATTTTAATCATCTGAATGATTAGTATTCACAATAAAATTAGCCCAAATGTA

Function

symbol description
stam Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

NR:

description
PREDICTED: collectin-12-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303646.1 True 6158 mRNA 0.48 23 23054500 23103788

Neighbor

gene id symbol gene type direction distance location
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 16346 22999911 ~ 23038154 (+)
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding upstream 216661 22808862 ~ 22837839 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding upstream 248566 22776639 ~ 22805934 (+)
bag1 bag1,LOC107746903,LOC106569734 coding upstream 279746 22770973 ~ 22774754 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding upstream 285429 22766263 ~ 22769071 (+)
si:dkey-32m20.1 LOC108267269 coding downstream 1835 23105623 ~ 23109703 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding downstream 20392 23124180 ~ 23144086 (+)
si:ch211-106h4.4 NA coding downstream 78082 23181870 ~ 23214191 (+)
si:ch211-106h4.6 LOC108267631 coding downstream 111287 23215075 ~ 23230453 (+)
ackr4a LOC108267630 coding downstream 169735 23273523 ~ 23276801 (+)
G69294 NA non-coding upstream 50398 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 115759 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 526944 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 657399 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 666755 22383094 ~ 22387745 (+)
G69443 NA non-coding downstream 180766 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 187622 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 227245 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 263873 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 343675 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 402053 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1292199 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1414343 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1730533 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2020747 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 214716 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 924318 24028106 ~ 24106223 (+)
G69971 NA other downstream 1005007 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1755238 24859026 ~ 24871263 (+)
tnr tnr other downstream 2604039 25707827 ~ 25881110 (+)

Expression


Co-expression Network