rc3h1b (LOC108267889,LOC108437509,LOC107681708)


Basic Information

Item Value
gene id rc3h1b
gene name LOC108267889,LOC108437509,LOC107681708
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29704488 ~ 29720768 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303651.1
tcacacacacacacacacacacttgatatGGCGACCAACAGAATAAGCCAGTGTTTTTTATTAGAGAGAAGATGAAGGCGTCCGGACTCATGAAGCATGAGTTTCAGGTCCCGCAGTATGTGATGAGCCACCAGGACGCGTGGTCGTTGTTATTTACGAGCTCCTTCTGATTCCAGTGGAATCTTCTTTTTgtggttgtttttgtttaatgagACGAACACGGTCACGCCTTGGCTCGTACATGTAGACCGTCCGGCGACGATGCCCGTCCAAGCGCCGCAATGGACCGAGTTCCTGTTGTGTCCCATCTGCACGCAGACGTTCGAGGAGACGGTGCGGCGGCCCATCAGCCTCGGCTGCGGCCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAGGCCTGCCCCTTCGACCAGACGGCCATCAACACGGACATCGAGCAGCTGCCCGTCAACTCGGCCCTGCTGCAGCTCGTCGGGGCTCAGGTGCCCAAACCGCAGCCTGTGGCGCTCATTACCTGTCCGGAAGACACCAAGCATTACGATGAGGCGCGGCAGTGTGTGGAGGAGCTCGCCCTCTACCTCAAACCTCTCAGCAGTGcgagaggTGTGGGGTTGAGTAACGCGGCACAGAGCATGCTCAGCAGACCCATGCAGAGGAAACTGGTAACGCTGGTGCACTGCCAGCTGGTGGAGGAAGAGGGCCGGGTACGTGCCATGCGTGCTGCTCGCTCGCTGGGAGAGCGCACCGTCACAGAGCTCATCCTGCAGCACCAAAACCCCCAGCAGCTCTCCTCCAACCTGTGGGCCGCCGTCCGCGCCAGGGGCTGCCAGTTTCTAGGGCCGGCCATGCAGGAGGAGGCCTTGAAGCTGGTGCTGCTGGCTCTGGAGGACGGATCTGCTCTGTCCAGGAAGGTGCTGGTGCTGTTTGTGGTGCAGCGTCTGGAGCCCAGATTCCCGCAGGCCTCCAAAACCAGCATTGGACACGTGGTTCAGCTGCTTTACCGCGCCTCCTGCTTTAAAGTGACCAAGAGAGACGAGGACTCGTCCCTgatgcagctgaaagaggagTTTCGAACGTACGAGGCTCTGCGGAGGGAGCACGACTCTCAGATTGTCCAGATCGCCATGGAGGGAGGTCTGCGCATCGCCCCTGACCAGTGGTCCTCTCTGCTCTACGGGGACCAGTCGCACAAGTCCCACATGCAGTCCATCATCGACAAGTTGCAGACACCTGCGTCGTTTGCGCAGAGTGTGCAGGAGCTGACTATAGCGCTACAGAGGACAGGCGACCCGGCTAACCTGAACCGGCTCAGACCTCATTTAGAGCTGCTGGCGTTCAACATCTCTAACGTTCCCGCTCCAGATGCTCCCCCTCCAACATGGGAGCAGCTGGAGAAGGGCCTGGTAGCTGTGAAGACCGTGGTGCACGGACTGGTGGACTTCATCCAGAACCACAGCAAGAAGGGCACGGAGCAGCAGCAGCCGCCGCAGCACAGCAAGTACAAAACCTACATGTGCCGTGACATGAAGCAGAAAGGAGGCTGCCCCCGCGGTGCCAGCTGCACCTTCGCCCACTcgcaggaggagctggagaaATACCGTAAAATGAACAAGCGCCTGGCTCCGAGACTTCCTTGTGGTCCCTCCCTGCTGCCCGATGAAGGCGTTCCTCTAGAGGGCGTGACCCGTAAACCCTCGCCTCTTACCAACGGCATCGTGGCGCCATGTCCACCACCAGCGCCGCAGCTTTTAGCACGTGGACACGAACCTTCAGCCTATGAGCTCATGCGCAAGCCCAAAATGGACAGCCTGAGCGCTCCTGGATCTCCCCCTGATTCTTTGGATAAGACTGGCCTGCCCCTGCCCCCCCACGCAGTCGCCCACCCGAGGGCCGAGCACCTGCCCGTGCCCAAGCAGATTCCTGGAGTGCCCCGTGGTGCTCCGCCGCTCTACCCACAACAGCAGCCTGAGCTTTTCTATCCGGAGGCCAGAGCGCCATCAGGAGCGCAGTATGATGGCCAGTACTCTGCTGGTACCCCATACCCCTACCAGCCGACTCAGTATGTGCCGCCCCGCTACATCCGTAACCCTCTGCCCTCGGGTGATGCCCCGTACCAGGACCCGTACCCTGCTTATGGCCCTGACCGCCAGTACCCACCTCCCCACCCCACGGCCCCGCCTTTCTCAGGCGTCAGTGCCCACCCTTACCCGCCCCCCTCTCACTATGATGCCCGCCGGCATGGCCCGTACGCAGCGCCGCCCCCGCCGCCACCCCCTCAGCCCTTCGGCCCACCCCGAGACGATCTGGTGCGCATGAGCCCCGTGTCCTTGGATGTGCCGCCCACTCCAGGCGCGCCCACCTCCCTCTACCACCCCGAGGCAGCATCCCGAGAGAGATATCCTCCAGAGGGGTACTACCCCCCTGCACCACATCTAGGCCAAATCAGGTCCCATATCAGGGACCCGTATGGCCGCTCCCAGCCCAGCCTGGACTACCTGCACCGCAGGCGTAAGGAGCTGCTGAACCAGCTAGAGGAGAGAAAAGTCATTTCTCCTCCACCATTCGCTGCCTCCCCGACTCTGCCCTCTCACACCTTCCCCAACGACTACCCTCAGGAGGCACAGTACATAGAGGACGGCGCCAAAGCTTTTGGCACCCGAGAAGCCGACTACGCCGGGCAGTACTCGCCATGGTCATGCGACACCATCGGCTCATACATCGGCTCCAAAGATCCCAAACCGAAAGACGGTGTGGCCGCTGGAGCAGTGGAAATGATGAACATGGAGGGAAAGAGTCTGAGGGAGCCGCCTCTGGACGGACAGCGGCGCTCAGCAGAAGCCAAAGACGATGATCCCATCATTCCGTTCGGCCCTCTACCCACGGTGTCGCCATTTGGCGCCATTTCCCGCACGTCTAAAACGGGCTACCAGACCACGGGCCCTGTGCAGGCCATGGCGTCCTCGCAGGCCTCTGGCTCCAAACCCATCACCATGGCAGCTGACTACTCATACGGAAACCATGGTGGCAGCTGGGGCAGTGCGTCTTACCCTCAGCACCAGAGTATCGCCTCTCCGGGCCACTTCAGCGAGCGGCTGCCTGTGTCCACCCCCGATCGCGAGCAGCTGAAGATGGAGCTCCAGCAAGTCAACCAGCAGATCAGTCAGCAGACGCAGATCCGCAGCATGGAGgccgcGAGTAACTCCATGCTGCTGCAGCGAGAGGCCAGCGCTCTGAACGCTCAGCCTCCAGCTGCTAAATGGCCTGTGGGGGGCGCCGTGTCGAGCGAGCAGCTCAGCCTCGAGCTTCACCACGTCGAGAGGGAAATTGGGAAGAGGACGCGTGAAATTGCTCTGGAGAACCAGGCGGCACAGGAATTCCAATACAAACTAAAGGCCACTGAAAACGGCCAGAGTGACCATAAAGCCCAACTGGAGGAGCTCTCTTTAGGCAGCGTCTCGAACGGCGTAAGCAGCATCGTGCCAGCCAGCAGCGTCGGGGGATCCGTGTTGTCTCTGACCAATAAGACGTCTTCGCTCACCCTTTGCTCCGGAGACCAAGCGGGAAGCGGATCAGAGCTCCAAAAGAACGGTGTCGTTCATTCTTAAGAGCGGCCgtaaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatacacacacacacagctctgtttgAGCTTTTCAGTCAAAAGCGTTAAGATGTGTTAACTGATTTGAAAAGAAATACGCCAATatgagggacacacacacacacacacacacgcgtgcgcgcgcgcacacCTGCATGCTGTTACATGCATGCACAAaacacttgttttattttagaaaaagaaatgagCAGTATCTGCCGTGATTATgaatcttttttcctttttgttctgtgaatgagcttttgtttttgttttaaacgaCTTCTCATCGCCTGGAAACCAGGGCATCTGATTatcctgattatttttttttctcctctgcattttttt

Function

NR:

description
PREDICTED: roquin-1 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15690 RC3H; RING finger and CCCH-type zinc finger domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303651.1 True 4021 mRNA 0.59 19 29704488 29720768

Neighbor

gene id symbol gene type direction distance location
LOC113540482 LOC108267690 coding upstream 101658 29596466 ~ 29602830 (+)
LOC113540073 NA coding upstream 145363 29554015 ~ 29559125 (+)
ccdc39 ccdc39 coding upstream 150941 29541983 ~ 29553547 (+)
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 164473 29534634 ~ 29540015 (+)
b3gnt5b b3gnt5 coding upstream 190709 29500475 ~ 29513779 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 31303 29752071 ~ 29760972 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 246903 29967671 ~ 29976291 (+)
rgs1 LOC108267137 coding downstream 265417 29986185 ~ 29989435 (+)
rgs13 LOC108268340 coding downstream 277736 29998504 ~ 30001345 (+)
blvra blvra coding downstream 293887 30014655 ~ 30022571 (+)
G73118 NA non-coding upstream 74665 29629593 ~ 29629823 (+)
G73092 NA non-coding upstream 163053 29541095 ~ 29541435 (+)
G73089 NA non-coding upstream 177570 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 179652 29524298 ~ 29524836 (+)
G73072 NA non-coding upstream 180246 29483262 ~ 29524242 (+)
G73123 NA non-coding downstream 1298 29722066 ~ 29723750 (+)
G73155 NA non-coding downstream 11883 29732651 ~ 29733363 (+)
G73169 NA non-coding downstream 44352 29765120 ~ 29766106 (+)
G73185 NA non-coding downstream 71748 29792516 ~ 29794205 (+)
G73512 NA non-coding downstream 209170 29929938 ~ 29930168 (+)
zgc:153115 LOC108268059 other upstream 23313 29673514 ~ 29681175 (+)
asip2b NA other upstream 80691 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 508339 29181767 ~ 29196149 (+)
G72873 NA other upstream 792384 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 907329 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 733989 30454757 ~ 30478293 (+)
G73944 NA other downstream 1025363 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1340962 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1630433 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 2039121 31759889 ~ 31776798 (+)

Expression


Co-expression Network