dhx30 (dhx30)


Basic Information

Item Value
gene id dhx30
gene name dhx30
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6580355 ~ 6602411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303652.1
tctctcactcctcctcTCTGAGGCGCcgaagcagtgtgtgtttttgtgtaaatatgGCGGCGCACTATAGCTCCATCATGCGTCTCCGGACTCTGTGCAACCTTGGGAGGAAAACCTTGGATATCAGAAGCAGAACCGTTTTGGACCGGACCGGTGTGAGCCTATACAGGACCCGAGCTGGAACCGCTCACCGCCGGGAAGAACCTGCCACCGACACGGACAGAGGCCAGTCTGACCTCCTCATGGAGTTTCCCGAGCCAAAGAATCTCCTACATTCAACTCTGTCTAGATCCCTGAGACAATCGAATATCTCTCGATATATCCAGTACAACTGCACAGACGGAGATATTAAGAGGGCGACAGTTACACTGTTCTGGCCTCAGAGGATCGAAGTAGAGGGATTCGGATCACGGAAACAGGAGGCGGAGCGACGCGCTGCAGCAGCTGCCTGCCATAGGCTGAAAGAACTGGGAGTTCTGGGTGCTAGGAACCAGCTTCCCACACAGAGGTTAGCCCGGCAGGATGGGTTGCGCTCATCTGTCTGGGAGGATGCAGAGGAAGACccgagtgtgtgtaaaaacagggAGCTACGACGAACCATGAGCAACAGGATGAGAAGAGCTGCGGGAAACCTGGAAGTGGTGGAAGAGGATCCGAAGGTCTCAGAGGCGCTCGCCATCTTCTCAAAGCCGAAGGCGCTTTTGGCGAGGGTTATTCAAGTGGCCACAACGTCTAGTAGCGTCAACGAGCTGCTGCACTACAGGACAGTGGGAGGGAAGGTGAAGGAGTGTGAACTCACTCTGCACTGGCCCGAGGAGATGAGCTTTACCGCCCACGGCCGCCGCAGACTAGAGGCTGAAACGCGAGCAGCAGCACTCGCCTGCCTCAGACTTAAAGAGCTGGAGCTTCTGGATGAGCAGAATAATCCTCTCACACATGCCAAGTACAACCAGGAGGAGGTAAGGGAGgcaggagagcgagagaggaggCCGTGCCGCGTGGAGATCCCTGACCACATGGAGCACAGGATTAGAGATTATTTAACGCAGtATCCAGTGGAGAAGGAGGTGCAGAAACTGTGGGAAGAGCGAGCAGACCAGAGGCAGTCTTCCTCCTTTAACGAGGATGATGAAatagatgaagatgatgaggatCCTATGCTTGATGCAATCACTGGCAAGCCATACCGCGCTCTGAACCCCGAGGAGGCAGAGTTACTGAGTGACAGCCTTCTGAGGCAGTGGGAGAGGGCGGGGCCAGCccgtggggcggagcttcctgTAGACTCTCATCGTGAACGTCTGGTGGAGGCAGTGGAGGCATCACGGGTGGTGGTGGTCGCTGGAGAGACGGGCTGCGGGAAGACAACGCGGATCCCACGCTTCCTGCTGGAGGGCCATGTGGAGGGCGGAGTCGGTGCTCACTGCAACATCCTGGTCACACAGCCACGCAGGATCAGCGCGGTCTCAGTGGCCGGGCGCGTGGCCAGCGAGATGGGCCCCGCCCTCAGGCCCTGCGTCGGCTACCAGGTTCGTTTAGAGTCTCGGCCCCCAGAGGCCAGCGGTGGCTCGCTCCTCTTCCTCACCGTGGGCGTCCTGCTGAGGAAGCTGCAGTCGAACCCGTGGCTGCGTGGCGTGAGTCACGTGCTGGTGGACGAGGTGCACGAGCGAGACGTGAACACAGACGTGTTGCTGGCCCTGCTGCGTCGCGCCCTTACCTGCAATCCTGAGCTGCGTGTGGTGCTCATGAGTGCCAGCGGAGACACGCAACGTCTTGCCTCCTACTTTGACGAGTGTCCTGTAGTGCACATCCCCGGCTTCATGCACCCTGTGAGACAGAGGTACCTGGAGGAGGTGCTGAGGGAGATGAGGAGACCAGTGGAGAAGGCGAACACCCAGGAGAAGGATGATCCGACCCCTGACCTTGATTTAGTGGCCGATGTGATTgatcacattcacactcatgGAGAGCCAgGTGCGGTGCTGTGTTTTCTGCCTGGCTGGCAGGACATTAAAGCCGTGCAGCAGAAGCTAGAGGAGAAACGGGCCTTCCAAATGGGCTCACAGCTCATCCtgccatTGCACTCCAGCATGTCTGTAGCAGATCAGCAGGTTGTGTTTAAGCGCCCCCCAGAGGGCCAGCGCAAAATTGTCCTGGCAACCAACATCGCAGAGACGTCCATCACCATCGATGACATAGTGCATGTTGTGGACCTCGGCACTCAAAAAGAGCAGAGCTACGATCCCAGAACCAAGGTCTCGTGTTTGGATACAGTCTGGATCTCTCGCTCAAATGTCATTCAGCGACGAGGGAGGGCTGGTCGATGCCAACCTGGCCACGCCTATCATTTGTTTCCCCGAAAACAACTAGATGCCATGACCACGTTTCCCATCCCGGAGATTCTGCGCACCCCCTTGGAGAGCCTGGTGGTTCAGGCTAAGATCCACAGTCCTCAGAGTAAGgctgtagacttcctgtcccAGGTGATGGACTCTCCAGAACAAGGAGCAGTGAGAGAAGCTGTGAGGACGCTGCAGGATATCGGTGTGTTAGACATCTCGGAGTGTCTGACTCCGCTGGGAGAGCGTGTGGCATGTATGTCATGTGACCCACGCTTGGGGAAGCTCCTggttctctcctctcttttccaCTGTGTCCTGCCCATGCTGTCTGTGGCAGCCTGTCTGACCCGAGACCCGTTTCACAACAGCCTGCAAAACCGCTCCACAGTCAACAAgTCTAAAGAGGCTCTGAGTGGCACCAGCTACAGTGATTATCTGGTGTTCAGTAGAGCAGTACAGGGTTGGCGAGAGCTGCAGGACAGACACAGACGGCAGGAGTATTTGGACTCACACAGTCTTTCAGCAGCCAGTCTGCGTTTTATACACGGTTTAACTCAGCAGTTCAGTGAGAATCTGGCGGAGGCGGAGCTAGTCACACACCCTGCCGAGTGTCTCCGCCCTTCATCACTGCTCAATCAGCACAGCAATCAGGAGGAGCTTCTTAAAGCTGTGCTGCTGGCAGGGTTTTACCCCAGCCTCATCCAGGTGAAGAGAGGCGTTGTAAGCAAAGGGGGCAGGTTTCGTCCCAACGACCTGTGTTACCGCACTCAGACTGGGCCTGTGTTACTCCACCGCTCCTCCGTCAACAGgGCCGAGCGAAAGCTTCCTAGTCGCTGGCTCACTTTCTTCTCTGCAGTTAAATCGAACGGTAGCGTCTTCATCAGAGACTCATCTGCAGTCCATCCTCTGGCCCTCCTGCTCCTCACTGACTGCAACCTGATTGAGCGTgCGTATGGCGATCAGGTGGAGGTGACCATGCCGGGCCGTTCTCTCATACGATGGGAGCTCTCAGCTCAGAGCTGGGAGCTGCTGTGGGCGTTGCGCACCTCTCTGCAGGCTATGCTTCACCGTAACCTCCGACCTTTAACCTCTGACTGTAGTGTCGAAGAGAGCAGTACTCAAGACGGCCAACTCATCTCTTTATTAGTGGACCTTCTGAACAGCACAGAGCCGGATGCTAACACTGCAGACAGTGATACAGAATGATGAAGCTCTTTTTTCAGCCTCATTGTATGAAACTCGCACTTTCTGTGAATCACCCTGCctcatattaaaa

Function

symbol description
dhx30 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Orthologous to human DHX30 (DExH-box helicase 30).

NR:

description
putative ATP-dependent RNA helicase DHX30

GO: NA

KEGG:

id description
K13185 DHX30; ATP-dependent RNA helicase DHX30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303652.1 True 3618 mRNA 0.56 21 6580355 6602411

Neighbor

gene id symbol gene type direction distance location
LOC113547283 NA coding upstream 3453 6572068 ~ 6576902 (+)
wrnip1 wrnip1 coding upstream 8278 6550985 ~ 6572077 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 375465 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 403196 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 416515 6162153 ~ 6163840 (+)
LOC113547232 LOC108262378 coding downstream 42117 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 105970 6708381 ~ 6713301 (+)
LOC113547278 NA coding downstream 111396 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 131173 6733584 ~ 6737199 (+)
gpaa1 gpaa1,LOC107671733 coding downstream 138162 6740573 ~ 6755800 (+)
trnar-ucu_1 NA non-coding upstream 149778 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 154011 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 166342 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 199893 6380245 ~ 6380462 (+)
LOC117596997 NA non-coding upstream 274793 6301325 ~ 6305562 (+)
LOC113547253 NA non-coding downstream 20425 6622836 ~ 6623651 (+)
LOC113547233 NA non-coding downstream 46371 6648782 ~ 6651846 (+)
G60529 NA non-coding downstream 186809 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 200045 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 207755 6810166 ~ 6812401 (+)
trnat-ugu_2 NA other upstream 436553 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 984130 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1188526 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1390642 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1565542 4974195 ~ 5014813 (+)
LOC113547228 NA other downstream 81925 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1453645 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2092941 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2122134 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2292059 8894470 ~ 8896729 (+)

Expression


Co-expression Network