tada1 (tada1,LOC106569412)


Basic Information

Item Value
gene id tada1
gene name tada1,LOC106569412
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5435223 ~ 5442703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303678.1
TGAACAGCAGGGGGCGGTGGACTTTTCCAGAGATGTAAAAAGAAGCCTAAATCTCTTAGTGTGGCATGATAACGCTATCACACTCGCAATGCGTGGAGTTATCGTGATCTACTTATCATAACTCATGCAAGATTTCCGGGATATTGGTTTTGTCTGAAGATCCGCGTTATTCAGAAGCCACCCCTTTGTGTAGCTCGATGGTTGGCGCCGATGTCGCTATGGCAGCTCACGCGAGCGAACTGGAGGTGGCGAAGAAGAACTTAACGGACGCCATTGGGGACAATATAAAGCAttaCTGGGCGAATTTGAAGCTGTGGTTCAAGCAGAAGATCAGTAAAGAGGAGTTTGATGTTGAGGCCCGTCGCCTTCTGGGACACGACAATGTTCACATCCACAATGACTTCCTGCTGGCCATTCTTACACGCTGCCAGATTATTGTATCCACACCAGCAGAGGGTCCCGGGTCACTGCAGTGGTCCGGAGGTTCTGCCTCAAAGCCCGCCAAGCCGAAAGGCAAGAAGAAGTTTTCATCCGTGCGCCAGAAATTCGACcATCGCTTCCAGCCCCAGAACCCGCTGAGTGGAGCTCAGACGTTCAGCCCTCGCGAGGCCGgagcggaggaggaggagatgaagCTCAGcgctcacacactcttactgcCCACGCGGGGGCAGCTGGAGGCCCGCATGATGGTGACCGCCTTCGAGATGGGCCTCGACAACGTCACCGAGGACGCCGTGAGCACTGTCGTGTGCGCTctcgagGTGCATTTAAAAGACCTGATCACTGCGGTGGTGTCGCGGAGAAAAGCCTACCGTCTGAGAGAGGGACACTTCCAGTACGCCTTCGGCAGTGACGTCGCACCGCAGCCGTACCTCAAGAACAGCCTGGCTGCGTACCACACTGTCACAGAGTACCCCCCTCCCAGTGCCTCGCTGCCGGCTGCTCCGCCCCCTCAGGTGTCTCCAGACGATGCAGAACAGCAGGCCGCTTTCCTATTGGCCTGCTCTGGCTCCAGTGCCCCCGCCCCCCTGCCTCCCATCAGCACGTACGATCTCCTGGAGGCTCTACAGgtgCACCGCAGGGTGATGCCTTCTCACACCGTGTACGCTCTGAACATGGAGCGCATCCTCGCCCGGCTCTGGCACCCGAGTCACGAGGAGCTAGAGCAGGACAACATCCACAGGCAGCGGCTGGCCGCCAAGGAGGGCCTGTCACTCTGCTGAGGCGCCGCCCGTGTCCTTCAGTTACACCTTCAACTTCCTGTTTCTGCCCAAGGAGGACAACTGGACTGTATACGAGTGTCATTGTGGACAGATTCTCCTTTTAGAataacagtttatttaaatgGTTTATAGAAATTCGAATTGTGAATTTTGAATCTGTGTTGCACATAACAGCATAATTAAACACATCGACTCGGATCAGgagattgattgatttttatagACCATTTAATTAAACGAATTTGATCTCGCTGTCTTAAGTCTTCAGTGCTCAGAATTGTTACTCATGGACCAGTTATGGTTTTACATAGCTAGTGTCCATGCTAACATTCTGGACAATTTATAATATCCGGCTGTATTTTGGTCCTTGTAGTGTGTTTGGcacttttgtaaatatttgtttatgaaGTGATTTTGCTACACATGTACCTTTTCATTGTAAAGGTCTGCAAATACAGGAAATAAAGCCCATCTCATGGTCA
>XM_034303679.1
TGAACAGCAGGGGGCGGTGGACTTTTCCAGAGATGTAAAAAGAAGCCTAAATCTCTTAGTGTGGCATGATAACGCTATCACACTCGCAATGCGTGGAGTTATCGTGATCTACTTATCATAACTCATGCAAGATTTCCGGGATATTGGTTTTGTCTGAAGATCCGCGTTATTCAGAAGCCACCCCTTTGTGTAGCTCGATGGTTGGCGCCGATGTCGCTATGGCAGCTCACGCGAGCGAACTGGAGGTGGCGAAGAAGAACTTAACGGACGCCATTGGGGACAATATAAAGCAttaCTGGGCGAATTTGAAGCTGTGGTTCAAGCAGAAGATCAGTAAAGAGGAGTTTGATGTTGAGGCCCGTCGCCTTCTGGGACACGACAATGTTCACATCCACAATGACTTCCTGCTGGCCATTCTTACACGCTGCCAGATTATTGTATCCACACCAGAGGGTCCCGGGTCACTGCAGTGGTCCGGAGGTTCTGCCTCAAAGCCCGCCAAGCCGAAAGGCAAGAAGAAGTTTTCATCCGTGCGCCAGAAATTCGACcATCGCTTCCAGCCCCAGAACCCGCTGAGTGGAGCTCAGACGTTCAGCCCTCGCGAGGCCGgagcggaggaggaggagatgaagCTCAGcgctcacacactcttactgcCCACGCGGGGGCAGCTGGAGGCCCGCATGATGGTGACCGCCTTCGAGATGGGCCTCGACAACGTCACCGAGGACGCCGTGAGCACTGTCGTGTGCGCTctcgagGTGCATTTAAAAGACCTGATCACTGCGGTGGTGTCGCGGAGAAAAGCCTACCGTCTGAGAGAGGGACACTTCCAGTACGCCTTCGGCAGTGACGTCGCACCGCAGCCGTACCTCAAGAACAGCCTGGCTGCGTACCACACTGTCACAGAGTACCCCCCTCCCAGTGCCTCGCTGCCGGCTGCTCCGCCCCCTCAGGTGTCTCCAGACGATGCAGAACAGCAGGCCGCTTTCCTATTGGCCTGCTCTGGCTCCAGTGCCCCCGCCCCCCTGCCTCCCATCAGCACGTACGATCTCCTGGAGGCTCTACAGgtgCACCGCAGGGTGATGCCTTCTCACACCGTGTACGCTCTGAACATGGAGCGCATCCTCGCCCGGCTCTGGCACCCGAGTCACGAGGAGCTAGAGCAGGACAACATCCACAGGCAGCGGCTGGCCGCCAAGGAGGGCCTGTCACTCTGCTGAGGCGCCGCCCGTGTCCTTCAGTTACACCTTCAACTTCCTGTTTCTGCCCAAGGAGGACAACTGGACTGTATACGAGTGTCATTGTGGACAGATTCTCCTTTTAGAataacagtttatttaaatgGTTTATAGAAATTCGAATTGTGAATTTTGAATCTGTGTTGCACATAACAGCATAATTAAACACATCGACTCGGATCAGgagattgattgatttttatagACCATTTAATTAAACGAATTTGATCTCGCTGTCTTAAGTCTTCAGTGCTCAGAATTGTTACTCATGGACCAGTTATGGTTTTACATAGCTAGTGTCCATGCTAACATTCTGGACAATTTATAATATCCGGCTGTATTTTGGTCCTTGTAGTGTGTTTGGcacttttgtaaatatttgtttatgaaGTGATTTTGCTACACATGTACCTTTTCATTGTAAAGGTCTGCAAATACAGGAAATAAAGCCCATCTCATGGTCA

Function

symbol description
tada1 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of SAGA complex. Orthologous to human TADA1 (transcriptional adaptor 1).

NR:

description
PREDICTED: transcriptional adapter 1-like

GO: NA

KEGG:

id description
K11317 TADA1, STAF42; transcriptional adapter 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303678.1 True 1708 mRNA 0.52 8 5435223 5442703
XM_034303679.1 False 1705 mRNA 0.52 8 5435223 5442703

Neighbor

gene id symbol gene type direction distance location
fggy fggy coding downstream 8454 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 35835 5393877 ~ 5399388 (-)
dnm3b LOC108268313,LOC108413145 coding downstream 77933 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 285001 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 331097 5100415 ~ 5104126 (-)
igfbp1b LOC108268024 coding upstream 153587 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 175160 5617863 ~ 5694235 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 283887 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 461493 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 488627 5931330 ~ 5949680 (-)
G59843 NA non-coding downstream 22398 5407481 ~ 5412825 (-)
G59839 LOC108267851 non-coding downstream 44155 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 45925 5388430 ~ 5389298 (-)
G59833 NA non-coding downstream 56943 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 105322 5322501 ~ 5329901 (-)
G59869 NA non-coding upstream 49323 5492026 ~ 5492374 (-)
G59865 NA non-coding upstream 112248 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 281822 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 283275 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 342592 5785295 ~ 5851346 (-)
LOC113547297 NA other downstream 348866 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 490202 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 787343 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 863396 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1178939 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 35839 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 457546 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1438679 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3009907 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3128793 8571496 ~ 8595625 (-)

Expression


Co-expression Network