acadvl (acadvl,LOC107738021,LOC107595296,LOC107731915)


Basic Information

Item Value
gene id acadvl
gene name acadvl,LOC107738021,LOC107595296,LOC107731915
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13420533 ~ 13436596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303680.1
ACTTCCGGTGGCTGAAGCCCTGCAGTGTCGGTGTATCCTGAGAGGGAAGGACACTCTCTTATCCTCCTTTAATCGTCCTGTAGCTTTGCAGAACAGATTCAGCAGAGCAGGTTTGCTTTCACCGGTTGGTCAGTGTTGTGGTTGATATTAATCCACCAGCTGCAGGCTTCAGGCGCTTTCTTCAAGGAGGACAAAAAGCCGACAGGAGaaattttaacaaacaaacaaacaaaccttttCAAGTTCAAGTTGTCATTTTGCTAACTAGCTAAAAGGCTAATCATGCTGGTACGTAAAGTCACTCAGAATGCGGCGCTGTGTAATGCTGTGCTTCGCCTACCACAGTCCATGTCAGGAACACAACGGCAAGCAGGAGCTGTCGTAGCTGTGCAAAGCCTGCGTCCTTATGTTAGCCAAAGTGCTGAGGCGGTCTTGGAGAAGTCGTCAGCCAGCAGTGGTGTTGCTGCCAAGGCTGAAAGAGTGGACAAGAAGGCTGCCAGTGTGGAGTCAAAATCCTTTGCTGTGAACATGTTTAAAGGGCAGATCAGCACCTCACAGGTGTTCCCCTTTCCCACAGTGCTGAATGAGGAGCAGTCCGAGTTTCTCAGGGAGCTCGTGGGACCTTGTTCAAAGTTTTTTGAAGAAGTAAATGACCCTGCTAAGAATGATCAACTGGAGAAGGTAGAAGATCAGACCTTGGAGGGGCTGAAGGAGATGGGAGCTTTTGGCCTGCAGGTGCCTGCTGATCTGGGCGGCGTGGGCCTCAACAACACACAGTATGCCAGGCTGGTGGAGATTGTGGGCATGCATGACCTGGGCGTGGGCATCACCCTTGGTGCTCACCAGTCCATCGGCTTTAAGGGTATTCTCCTCTTCGGCAATGAGCAACAGAAAGAGAAGTACCTTCCCAAGCTGGCCTCAGgagAAACAATTGCTGCATTCTGTCTGACTGAGCCATCTAGTGGCTCAGATGCTGCCTCTATCAGGTCTGTTGCTGTGCAATCACCCTGTGGAAAGTACTTCACCCTCAATGGAAGCAAAATttggatcagTAATGGAGGCCTGGCTGAGATCTTTACTGTGTTTGCTAAGACTCCAGTGAAAGATGAGAAAACTGGAGAAGTGAAGGACAAGATCACTGCTTTCATTGTTGAAAAAAGCTTCGGAGGAGTTACACATGGCCCTCCAGAGAAGAAGATGGGCATCAAGGCCTCAAACACAGCAGAGGTGTACTTTGAGAACGTTCGTATACCAGCCGAGTGCGTACTGGGTGAAATCGGAGGAGGATTTAAGGTGGCCATGAATATCCTTAACAACGGGCGCTTTGGCATGGCTGCAGCACTCTCAGGAACCATGAAGGGTGTTCTCGCTAAAGCGGTGGACCATGCTGCGAACAGGACACAGTTCGGTAACAAAATCCACAACTACGGAGTCATACAGGAGAAAATGGCCAGAATGGCCATGATGCAGTATGTTACAGAGTCTATGGCCTACATGGTCAGTGGGAACATGGACAGTGGAGCAACAGATTTCCAGATCGAGGCTGCCATCAGTAAAATCTTTGCCtctGAAGCAGCATGGACTGTGACTGATGAGTGTATTCAGATTATGGGTGGAATGGGTTTCATGAAGGACGCTGGTGTCGAGAGGGTCCTGCGAGACCTGCGAATCTTCCGTATCTTTGAGGGCACCAACGACATTCTGCGACTCTTCGTGGCGCTCAACGGCTTCCAGAATGCAGGAAATCAGCTGAAGAACttacaaaaagctctgaaaagTCCATTCAGCAATGCTGGCTTGTTGGCTGGGGAGATCACCAAACGTGCCAAAAGGAAGGCTGGCATGGGTACAGGCCTCACGCTGCAGGGAAGTGTCCATCCAGAACTGGCTCACAGTGGCGCTCTGGCGGTTAAAGCTATTGAGCAGTTTGGAGAGGTGATTGAAGAACTGCTTCTAAAGCATGGCAAAAGGATCATTGATGAGCAGTTTGTGCTGAAAAGAGTTGCAGACTGTGCTATTGACTTATATGCTATGGTTGTGGTGCTGTCCCGGGCCTCCAGGTCTTTGAGTCAGGGTCACTCTTCTGCTCAGCATGAGAAGATGCTTTGTGAAACCTGGTGTACTGAGGCTCATGAGAGAATCATGCAGGACATCAAGTTCCTGAGGTCAGGCACATCCAAGCAGATCTTCAAGAACCTGCGGGCCATTTCTGCAGCTGTGGTAGAGAATGGAGGGGTGGTTTCTCCTCATCCCTTGGgcttttaaaaatcactttcctctttctcttagTGCCATCAGTCAGTCATAATCTAACTGTCTCTTAGACATTGATAAGCATTCATATTTCATGTGACTTTCCACATGGCTCAGTGCTTCAAAGCTGGGCGAGTGGAGGGAATTGTTATACCCCTATAAGACTTGCTAGTACCAGTCTGTAAAATTAATGTCAAATAAACTGAATCTGCAAAGATTTCAGCACAGGAAATGTTTCGAAAGTGTTTTGGGGTCTGTAACTGGTTGGTATAGTATGTGAGAGATTCACTGATTGAAAATATAgtactaggtttttttttttttttgtttgttttttttaaaccacatacTTGGACCCACATCTGGCCTCTTTCTAGTGTTGTTAATTTGTCATTGTATTGAAGGGATTTTAACTGAA

Function

symbol description
acadvl Predicted to enable fatty-acyl-CoA binding activity and very-long-chain-acyl-CoA dehydrogenase activity. Acts upstream of or within head development. Predicted to be active in mitochondrion. Is expressed in female organism; pectoral fin musculature; and pronephric duct. Human ortholog(s) of this gene implicated in very long chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADVL (acyl-CoA dehydrogenase very long chain).

NR:

description
very long-chain specific acyl-CoA dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K09479 ACADVL; very long chain acyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303680.1 True 2671 mRNA 0.48 21 13420533 13436596

Neighbor

gene id symbol gene type direction distance location
dvl2 dvl2 coding upstream 3672 13399435 ~ 13416861 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 26361 13391809 ~ 13394172 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 45483 13328033 ~ 13375050 (+)
agfg2 LOC108267520,LOC108442826 coding upstream 93314 13311880 ~ 13327219 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 168719 13245985 ~ 13251814 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding downstream 7198 13443794 ~ 13450823 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 49940 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 97221 13533817 ~ 13553948 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 128132 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 137038 13573634 ~ 13645984 (+)
G63901 NA non-coding upstream 3092 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 32579 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 153499 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 220671 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 284673 13135659 ~ 13135860 (+)
G63898 NA non-coding downstream 22766 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 67864 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 133406 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 259053 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 318948 13755544 ~ 13759751 (+)
G63903 NA other upstream 1837 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 134699 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 200674 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1125400 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1715197 11644901 ~ 11705336 (+)
LOC113539889 LOC108267838 other downstream 31956 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 122027 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 268821 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 819148 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1195434 14632030 ~ 14658936 (+)

Expression


Co-expression Network