copa (copa)


Basic Information

Item Value
gene id copa
gene name copa
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26770582 ~ 26786518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303683.1
aaactttatttgacTCCGCGCAGGAAACACTTTATTTCGGTAGACGTGTCAGCTGAGGAAGTGCAGAAgccgcgagagagagagagagaaaagagaagaattattaattatagaAATCACTTCTGCACACCAGCTATCTTTAGATTGGATTGTTGGATTAGACACGCAGAAACGCGGAGATGTTAACCAAATTCGAGACCAAATCAGCTCGAGTGAAAGgGCTGAGTTTCCACCCGAAGCGGCCGTGGATCCTGGCCAGTCTTCACAACGGCGTCATCCAGCTGTGGGATTATCGCATGTGCACCCTCATCGATAAGTTCGACGAGCATGACGGTCCGGTGAGAGGGATCGACTTCCACAAGCAGCAGCCTCTGTTTGTCTCGGGTGGAGACGATTACAAAATCAAGgtatggaACTACAAGCTCCGTCGCTGTCTCTTCACCCTGCTTGGACACCTGGACTACATCCGCACCACCTTCTTCCACCATGAGTACCCATGGATCCTGAGCGCTTCAGATGATCAGACCATCCGTCTGTGGAACTGGCAGTCCAGGACCTGTGTCTGtGTTCTGACAGGTCATAACCACTACGTGATGTGTGCTCAGTTCCACCCTTCGGAGGACCTGGTGGTGTCGGCCAGCCTGGATCAGACCGTGCGGGTGTGGGATATCTCCGGTTTGAGGAAGAAGAACCTGTCTCCGGGCGCTGTGGAAACAGAAGTGCGTGGCATCACAGGGGTGGATCTGTTTGGAGCATCAGATGCTGTGGTTAAACACGTGCTGGAGGGTCATGATCGAGGGGTGAACTGGGCAGCGTTCCATCCCAGCATGCCTTTGATTGTGAGCGGAGCTGATGACCGTCAGGTGAAGATCTGGAGGATGAAcgAGTCGAAGGCGTGGGAGCTGGACACCTGTAGGGGGCACTACAACAATGTGTCCTGCGCTGTCTTCCACCCACGCCAGGAGCTCATCCTGTCCAACTCCGAGGATAAGAGCATCCGAGTGTGGGACATGTCCAAGAGGACCGGTGTCCAGACCTTCCGCAGGGACCACGACCGCTTCTGGGTGCTCGGAGCTCATCCCAATCTCAACCTGTTTGCTGCtggtcatGACAGCGGGATGTTGGTGTTTAAGTTGGAGCGTGAGCGTCCTGCCTACGCTGTGTACGGGAACATGCTGTACTACGTCAAGGACCGCTTCCTGCGTCAGCTCGACTTCAACAGCAGCAAAGACACGGCTGTCATGCAGCtacgcagCGGCTCTAAGTTCCCTGTCTTCAGCATGTCGTACAATCCAGCGGAGAACGCAGTGCTGCTGTGTACGAGAGCCACTAATCTGGAGAACAGCACGTATGATCTGTATTCCATCCCTCGAGAGAGCGACTCGCAGAACCCTGATGctccaGAGGGAAAGCGCTCATCAGGACTCACGGCAGTGTGGGTGGCCCGGAATCGCTTCGCTGTGTTGGACCGCATGCACTCGCTGCTGATAAAGAACCTGAAGAATGAGATTGTGAAGAAGGTTCAGGTGCCGAGCTGTGAGGAGATCTTCTACGCAGGGACGGGTTCTCTGCTGCTGAGGGACGCAGACGGAGTCACGCTGTTCGACGTGCAGCAGAAACGCTCACTCGCTACTGTCAAAATTGCCAAAGTCAAATACGTGGTGTGGAGCGCAGACACCAGCCACGTCGCCCTGCTGGCCAAACACGCCATTATGATCTGCAACAGGAAGTTAGAGAGTCTGTGTAACATCCATGAGAACATCCGTGTGAAGAGCGGCGCATGGGATGAGAGCGGCGTGTTTATTTACACCACCTCCAACCATATCAAATACGCCCTCACCTCAGGTGATCATGGTATAATTCGCACCCTGGACCTGCCCATTTACGTGACCCGTGTGAGGGGGAACAGTGTGTACTGTCTGGATCGGGAGTGCAGACCCCGTGTCCTCAACATTGACCCGACCGAGTACCGCTTCAAACTTGCACTTGTTAACCGCAAATATGACGAGGTGCTGCACATGGTGCGTAACGCTAAGCTGGTGGGTCAGTCCATCATTGCGTACCTGCAGAAGAAGGGCTACCCGGAGGTGGCGCTACACTTCGTCAAGGATGAGAAAACCCGCTTCAGTCTGGCGCTGGAGTGCGGAAACATCGAGGTGGCGCTGGAGGCGGCGAAGGCTCTGGACGAGCGGAGCTGCTGGGAACGTCTGGGCGAGGCGGCTCTGCTGCAGGGTCATCACCAGGTCGTGGAGATGTGCTACCAGAGAACTAAGAACTTTGATAAGCTTACCTTCCTTTACCTGATCACAGGGAACCTGGCCAAGCTCCGCAAGATGATGAAGATCGctgagaTCAGGAAGGACATGAGTGGACATTATCAGGGTGCTCTGTATCTGGGAGACGTCAGTGAGAGAGTGCGCATCCTCAAGAACTGTGGACAGAaGTCTCTGGCGTACCTGACTGCAGCGACACATGGCATGGATGAGGAGGCTGAGGCGCTCAAAGAGACCTTCGACCTGGAGAAGGAGATgatcccCGAGGTAGACCCAAACGCTGAGTTGTTGCAGCCTCCTCCTCCCATCAACCCTCTGGACACAAACTGGCCCTTGCTCACTGTCTCTAAGGGCTTCTTCGAGGGAGCCATCGCTGCTAAAGGAAGAGCAGGTCAGATGGTGGCCGATCTGGACATGGATGCTCCTGGAGGAGAAGGTTGGGGTGAAGATGCAGAGCTCCACCTGGATGAAGATGGGTTTATGGACGCTCAGGAGGGTCTGGGTGAGGAAGGAGCGCTggggaaggaggaaggaggaggatgGGAGGTCGAGGAGGATCTGGACCTTCCACCTGAACTGGATGTGCCATCTGGTGCTGGAGGCGGTGCTGAAGGAGAAGGCTTCTTTGTCCCACCCACCAAAGGTATTAGCCCTGCCCAGATGTGGTGTAACAACTCACAGTTACCGGTTGACCACATCCTCGCCGGATCCTTCGAGACAGCCATGAGGCTGCTGCACGATCAGGTGGGCGTGGTATGCTTCGAGCCATTGAAGCCCCTCTTCATGCAGGCGTTCTCGCGGGGGCGCGTGTCCTACGTGGGGCTTCCATCTCTGCCCTGTCTCTTCTCCCATCCTCTGAGGGATGGGGGCACGACCGAGGGCAGGAGACAGCGAGACGGGCAAAAGGGCGGCGTCCCGGCAGTGGGGCTGCACCTGCGTGACCTCATCGCCCGCCTGCAGCAGTGCTACCAGATGACCACCGCAGGGCGCTTTGACGAGGCCGTCGACAAGTTCAGGAGCATCTTGCTGTCCGTCCCTCTGCTGGTGCTCGATAACAAACAGGAGATCGCTGAGgcccAGCAGTTGATCACTATCTGTAAAGAGTACATTGTGGGTCTCACCATGGAGACGGAGAGGAAGAAGCTTCCTAAAGAGACCCTGGAGCAACAGAAGAGGCAGTGTGAGaTGGCGGCATACTTCACACACTGTAACCTGCAGCCGGTCCACATGGTGCTGGTGTTGCGCACGGCGCTCAATCTCTTCTTCAAACTGAAAAACTTTAAGACGGCCGCAGGGTTCGCACGCCGCCTGCTCGAGCTCGGACCCAAACCTGAGGTGGCACAGCAGACGCGCAAGATCCTGGCAGCATGCGAGAAGAACCTGACTGATGCCCACCAGCTCAACTACGACCCCCACAACCCCTTCGACCTGTGCGCCGCCTCCTTCACCCCGCTGTACCGAGGACGCCCCGTGGAGAAGTGCCCTCTCTCCGGGGCCTGCTACTGCCCCACCTACAAAGGGCAAGTGTGCAGGGTCACACAGGTGACTGAGATCGGTAAGGACGTGATCGGGCTGCGTGTGAGTCCTCTGCAGTTCCGCTAAAGgagcaccaacacacacacacacacacacacacacacacacacatctatagaTAAAGAATTAAAACTAACTCTATATAGATAATAAAAACGTACAATATATAGTGTAACTTAAAGGCTGTGATCTTCTCACTGtcgtgtgtgtattgtgtttctGCTTGCTtaatgtatctctctctctcactcacacacacaccacttctgTGTTTAACCcctgaaaaactgaaataaacatccTCCAAGCTG

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

NR:

description
PREDICTED: coatomer subunit alpha

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05236 COPA, RET1; coatomer subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303683.1 True 4120 mRNA 0.55 29 26770582 26786518

Neighbor

gene id symbol gene type direction distance location
slitrk3b LOC108267197 coding downstream 58278 26708082 ~ 26712304 (-)
ccnl1b ccnl1 coding downstream 91734 26672747 ~ 26678848 (-)
sppl2 sppl2b coding downstream 174592 26578794 ~ 26595990 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 317751 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 402607 26338735 ~ 26367975 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 569 26787087 ~ 26790914 (-)
map1sb LOC108267453 coding upstream 5505 26792023 ~ 26805367 (-)
LOC113540659 LOC108267452 coding upstream 22138 26808656 ~ 26810250 (-)
LOC117597119 NA coding upstream 48507 26835025 ~ 26835888 (-)
samd7 LOC108267443 coding upstream 49128 26835646 ~ 26845018 (-)
G71707 NA non-coding downstream 73485 26696893 ~ 26697097 (-)
G71705 NA non-coding downstream 74261 26694946 ~ 26696321 (-)
G71704 NA non-coding downstream 80188 26689070 ~ 26690394 (-)
G71700 NA non-coding downstream 98737 26671641 ~ 26671845 (-)
G71699 NA non-coding downstream 99046 26671260 ~ 26671536 (-)
G71734 NA non-coding upstream 60828 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding upstream 66749 26853267 ~ 26856672 (-)
G71764 NA non-coding upstream 108163 26894681 ~ 26895564 (-)
G71765 NA non-coding upstream 148472 26934990 ~ 26935197 (-)
G71815 NA non-coding upstream 244799 27031317 ~ 27036462 (-)
G71596 NA other downstream 219552 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 394174 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2184534 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2465656 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3238566 23531238 ~ 23532016 (-)
G71832 NA other upstream 310084 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 417265 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 608839 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 609633 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 628749 27415267 ~ 27432678 (-)

Expression


Co-expression Network