blvra (blvra)


Basic Information

Item Value
gene id blvra
gene name blvra
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30014655 ~ 30022571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303701.1
GTCCGAGACGTCAACATGTCCGCCATATTGAGTTGCAGTTCATCCTTTCGGCCACCAGATGTCACTAGTGTGCAGATCAGCGCCCTCCATCTGCGCATGCGCCAGTGTGCGTCACTCACATATACTTCTGCAAAATTGTGTAAAAGCCGACATCCTACAGCTATTGTTTACATTGAGACCAGATTTATCTGCGGTGACATGTTTGGGTGTGTGGTGGTAGGCGTCGGCATGGCGGGCCGAGTCAGGATCCGAGACCTTCTCGCGCCTCTGCCGTCCAGCGCTGCGGAAATCTTCACTCTTAAAGGCTTGGTGTCTAGGAGGCCGCTGGAGGAGCAGCAGGGAGTCCAACAGATCCCTTTGGAGGAGGTGCTGAGCCGCAGCGACATTCAGGTGGCCTTCTTGTGCACAGAAAACGCCAGCCATGAAGATTACATCAGACGGTTTCTTGAGGCAGGGAAACACGTGTGTGTGGAGTATCCCATGGCCCTCAGCTACACCGCCGCCGCTGACCTGTGGGACCGGGCGCAACAGAAAGGTTTGGTCCTGCACGAGGAACACATCGAGCTCCTGACCCCCGACTTCAAGCAGCTGAAGAAAGACATAGCTGGGAAACAGCTGGAAGAAGGAAGCCTGCATTTCACAGGAGGTCCACTCAAGAGCGGATTCGGGTTCCTGTCGTTCAGCGGCATCGCCCGCCTCACCTGGCTGGTGGATCTTTTCGGAGAGCTCAGCGTTAAAGCGGCGTCGATGGTCGAGGAACCGGAGAGGAAGCACACGAAGATGACGGTCCACCTGTTAACCAAGGATCAGAAACCCCTGACCTGGACGGAGGAGCGCGCTGAAGGCCTGAGCCGTGGCAAACGCATCCACCTGCGCTTCAGCACCTGCACGGTGACCGAGCTGCCGGCTGGAGTCCAGGAGCCCGTGGGCATCTTCATGCAGGACATGGTGCTGTTTGGGAGCAAGCTGCAGGGCACCGTGCCGCCCGAACAACTCCAGGCCGAGCGGAGTCGCATCCTTCACTGCTTCAAGCTGGCTGAGGACATCAGGCGACTCTGCCAGGACACGACAGCCTGAAATTACTCACGAGAGAGGGACAGCGAGACGGCTCAGGacttcacaacacacacacttagcacaGAGTTCTCTGTATCAGGGTTTCTATCGATTCGCCGTTACACAAGTTGTGAATTTATGCACAAATAGGCTTGGCCAAGCTGAAAAAGTTgcagtattaataataaaaaataaaaaaaaatagattgcTTTCAATAATGACGTGGTCTCTGGATGGTTGCATCTCAAACATAGCGCAagtaaaattgtttatttttaatacagacTATTTGATAGCTACGTTTTCCCGTAGCTCTGATACAAAATTAAAGATGAAACTTTAAAAACAGTA

Function

symbol description
blvra Predicted to enable biliberdin reductase NAD+ activity; biliverdin reductase (NADP+) activity; and zinc ion binding activity. Predicted to act upstream of or within heme catabolic process. Predicted to be located in cytoplasm. Is expressed in brain; gill; hematopoietic system; and liver. Orthologous to human BLVRA (biliverdin reductase A).

NR:

description
biliverdin reductase A isoform X1

GO:

id name namespace
GO:0042167 heme catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004074 biliverdin reductase (NAD(P)+) activity molecular_function

KEGG:

id description
K00214 BLVRA, bvdR; biliverdin reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303701.1 True 1408 mRNA 0.53 8 30014655 30022571

Neighbor

gene id symbol gene type direction distance location
rgs13 LOC108268340 coding upstream 13310 29998504 ~ 30001345 (+)
rgs1 LOC108267137 coding upstream 25220 29986185 ~ 29989435 (+)
rgs18 LOC108268317,LOC108428888 coding upstream 38364 29967671 ~ 29976291 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding upstream 253683 29752071 ~ 29760972 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding upstream 293887 29704488 ~ 29720768 (+)
ebi3 LOC108267125 coding downstream 23324 30045895 ~ 30050490 (+)
keap1a keap1a,LOC108268010,LOC108428896,LOC107721712,LOC107690048,LOC107588875,LOC107749088 coding downstream 75134 30097705 ~ 30109835 (+)
zgc:110158 zgc:110158,LOC108267812,LOC108428898,LOC107678694,LOC105906991,LOC107690032 coding downstream 116432 30139003 ~ 30194574 (+)
znf622 znf622,LOC107721690 coding downstream 177123 30199694 ~ 30204010 (+)
d2hgdh d2hgdh coding downstream 182627 30205198 ~ 30211975 (+)
G73512 NA non-coding upstream 84487 29929938 ~ 29930168 (+)
G73185 NA non-coding upstream 220450 29792516 ~ 29794205 (+)
G73169 NA non-coding upstream 248549 29765120 ~ 29766106 (+)
G73155 NA non-coding upstream 281292 29732651 ~ 29733363 (+)
G73123 NA non-coding upstream 290905 29722066 ~ 29723750 (+)
G73533 NA non-coding downstream 9739 30032310 ~ 30032788 (+)
G73564 NA non-coding downstream 61867 30084438 ~ 30084819 (+)
G73545 NA non-coding downstream 88041 30110612 ~ 30111156 (+)
G73567 NA non-coding downstream 89818 30112389 ~ 30112630 (+)
G73568 NA non-coding downstream 95435 30118006 ~ 30118492 (+)
zgc:153115 LOC108268059 other upstream 333480 29673514 ~ 29681175 (+)
asip2b NA other upstream 390858 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 818506 29181767 ~ 29196149 (+)
G72873 NA other upstream 1102551 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 1217496 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 432186 30454757 ~ 30478293 (+)
G73944 NA other downstream 723560 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1039159 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1328630 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1737318 31759889 ~ 31776798 (+)

Expression


Co-expression Network