LOC117597083


Basic Information

Item Value
gene id LOC117597083
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25423546 ~ 25425176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303716.1
CGTTTGGATGATGGCACGCTACACGGGTGAAGAAGCACTCCGGCTGGTTCTGGACAGCGACGAAGAGATTACTTTCTCCTCAGAGGAAGAGCGCGACTCGGATGACGAGCGTTTGCATTTTGAAGAGCGAGTGGACCCAGCGGAGGATATCATTCCTGACGGGACTGTGAATACACCACTCTCGCCTTCACCTGCATCTCGCACAGGAAGTGGATGCAGacgtgagaaaaacagtgaaaaagaaCCTGTGGCAAAGAGAGCCAAAGCAGATAAGCAGCCCACTCTGTCATGGAACACAGAGACTGATGTTGACATGGCTCCACAGGCTCTGAGATTCCTGCCCACACTGCAACCTGGACCACAGATAGACCCAAGACCCTGTGAGGCACACACTCCCATGAGTctcttcaaaatgtttttttcttcaactgcTGTGTCAACTCTGTGTCGAAACACCAATGCTCAGGCTGCCAGGGCACGTGCAAAgggccataaatataaatggacaGACGTCAGCATCAGTGAGCTGTACTGTTACATTGGGCTACTCTTCTTCATGGCCATGGTGAAGTTGAGGTCCATCAGAGACTACTGGCGGCAGGATAGTGTTTTCTCTGTTCCTTTTCCTGCCACAATCATGTCAAGGGACAGATACCGCACCATTTCATGGAATCTGCACATGAGTCACCCAGATGCTGACAAGGACAATGACCGAAAGAGAGGCACAGCTGAACACGACCGTCTTTTCAGGATCAGACCCCTCATGGACACTATCCGGCATGCATGTAAGGCCATCTATCATCCAAGACAAAATTTGGCAGTGGATGAAAGAATGGTGGCATGCAAAGCAAACACAGGAATGACTAAGTACATGAAAGCCAAACCAACCAGGTGGGGCTTCAAGTTGTTTGTTCTTGCGGACTCATCAAatggatatactgtagattttgcTGTGTACACAGGAAAGAACAACTTTCCCACAGGCCATGGACTGTCATATGATGCTGTGACATCTCTGTTGGACCGTAGAGTTTTGGGCTCTGGGTACCATGTATACATGGATAATTTTTACACTAGTCCCAAGCTTCTAACAGACTTGTTTGCTTTGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGGAAGGATTGCCCTCGGAATGCAGCTAACTCACTCACCAAAAATCTGTGAGGGGCTCCATCA
>XM_034303717.1
CGTTTGGATGATGGCACGCTACACGGGTGAAGAAGCACTCCGGCTGGTTCTGGACAGCGACGAAGAGATTACTTTCTCCTCAGAGGAAGAGCGCGACTCGGATGACGAGCGTTTGCATTTTGAAGAGCGAGTGGACCCAGCGGAGGATATCATTCCTGACGGacgtgagaaaaacagtgaaaaagaaCCTGTGGCAAAGAGAGCCAAAGCAGATAAGCAGCCCACTCTGTCATGGAACACAGAGACTGATGTTGACATGGCTCCACAGGCTCTGAGATTCCTGCCCACACTGCAACCTGGACCACAGATAGACCCAAGACCCTGTGAGGCACACACTCCCATGAGTctcttcaaaatgtttttttcttcaactgcTGTGTCAACTCTGTGTCGAAACACCAATGCTCAGGCTGCCAGGGCACGTGCAAAgggccataaatataaatggacaGACGTCAGCATCAGTGAGCTGTACTGTTACATTGGGCTACTCTTCTTCATGGCCATGGTGAAGTTGAGGTCCATCAGAGACTACTGGCGGCAGGATAGTGTTTTCTCTGTTCCTTTTCCTGCCACAATCATGTCAAGGGACAGATACCGCACCATTTCATGGAATCTGCACATGAGTCACCCAGATGCTGACAAGGACAATGACCGAAAGAGAGGCACAGCTGAACACGACCGTCTTTTCAGGATCAGACCCCTCATGGACACTATCCGGCATGCATGTAAGGCCATCTATCATCCAAGACAAAATTTGGCAGTGGATGAAAGAATGGTGGCATGCAAAGCAAACACAGGAATGACTAAGTACATGAAAGCCAAACCAACCAGGTGGGGCTTCAAGTTGTTTGTTCTTGCGGACTCATCAAatggatatactgtagattttgcTGTGTACACAGGAAAGAACAACTTTCCCACAGGCCATGGACTGTCATATGATGCTGTGACATCTCTGTTGGACCGTAGAGTTTTGGGCTCTGGGTACCATGTATACATGGATAATTTTTACACTAGTCCCAAGCTTCTAACAGACTTGTTTGCTTTGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGGAAGGATTGCCCTCGGAATGCAGCTAACTCACTCACCAAAAATCTGTGAGGGGCTCCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303716.1 True 1204 mRNA 0.48 3 25423546 25425176
XM_034303717.1 False 1147 mRNA 0.48 2 25423546 25425176

Neighbor

gene id symbol gene type direction distance location
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding downstream 167697 25139815 ~ 25255849 (-)
cenpl cenpl coding downstream 401130 25013206 ~ 25022416 (-)
eif2b3 eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854 coding downstream 459666 24919527 ~ 24963880 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding downstream 511756 24883746 ~ 24911790 (-)
atp6v0b atp6v0b,LOC102788333 coding downstream 668433 24748101 ~ 24755113 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding upstream 136158 25561334 ~ 25631200 (-)
tnn tnn coding upstream 479264 25904440 ~ 25932761 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding upstream 545458 25970634 ~ 25973005 (-)
parp2 parp2 coding upstream 894111 26319287 ~ 26329275 (-)
sdr39u1 sdr39u1 coding upstream 913559 26338735 ~ 26367975 (-)
G70540 NA non-coding downstream 550713 24872630 ~ 24872833 (-)
G70044 NA non-coding downstream 1243682 24179031 ~ 24179864 (-)
G70027 NA non-coding downstream 1277305 24145890 ~ 24146241 (-)
G70026 NA non-coding downstream 1277762 24145578 ~ 24145784 (-)
G70025 NA non-coding downstream 1285054 24138293 ~ 24138492 (-)
G70970 NA non-coding upstream 127901 25553077 ~ 25554229 (-)
G71013 NA non-coding upstream 146133 25571309 ~ 25571525 (-)
G71037 NA non-coding upstream 185061 25610237 ~ 25610440 (-)
LOC117597162 NA non-coding upstream 306217 25731393 ~ 25782894 (-)
LOC117597207 NA non-coding upstream 458952 25884128 ~ 25885257 (-)
ccdc24 ccdc24 other downstream 837498 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 1118620 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 1891530 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 1905876 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 1907187 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 946745 26371921 ~ 26376408 (-)
G71596 NA other upstream 1046904 26472080 ~ 26551030 (-)
G71832 NA other upstream 1671426 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 1778607 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 1970181 27395357 ~ 27395429 (-)

Expression


Co-expression Network