LOC113537671 (LOC108261092,LOC108261095,LOC108261482,LOC108261096)


Basic Information

Item Value
gene id LOC113537671
gene name LOC108261092,LOC108261095,LOC108261482,LOC108261096
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4315778 ~ 4334167 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303799.1
ggaaagaagaagaacagtcTGTATGTACTAAAAGATAAGTTAAAGATCTTAGATAAATTAattgtctctttctttcctaGTAGTGTAAGCTGACAGCGAGAAAACACAGGAAGTGTAGAGACTGTAAAACACACCTCtgctctgtcagtcagtcagtcattagagGTAGAGGATGGAGCTGAGTCCACtccctgtgatgctctTGTTGGTTTCACTTATACCAGTGGCCCATGCTCAAGggAGTCCTAAAGCTGTGGTGTCCATAAAGCCTGATACTCACGTGTTCGTTGAAGAGCGTGTTACTCTCAGATGTGACATACAGGGAGGACGAGACACTGAGAGACCATACAGctggtataaaaataatagaagaCTCTATGAATATGGAAACAATTCAGCCATCACAGCGCAGGAAATCATTATCCGAGCTGTCACGAACTCTGACAGTGGTGATTACACCTGCAGTGGACAGTATTCAGAGATCAGTGATGCTGTTGCActgactgtatcagCAAAACCCAAACCGACTGTAAGAGTGAATCCTCAGAGCTCTGTCTACACTGGAGAGACCATCACTCTGAGCTGTGAGCTGCAGTCAGCTGGATGGAAGTTTCAATGGTACAAATATAATGAGCAGTTGCAGCTTTTGAGCACTGAAACTGTACCCAAAAACAAATTCCGTGTGACAGTCGGTAACGCAGGAgaaacagtgtatcagtgtacaGCATGGAGGTATAACTCGTGGACAGACACATACTACTACACAGAGAACAGTGATCAAGTCAGGATTACAGCAAGAGAGAGACCATGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTCACTGAAGGAGACTCAGTGACTCTAAGCTGTGACGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAGCTGTTCCCTACAGAAACGGCTTAActcaaataaaacataatcatgGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTAAAACACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagccgttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAGTCccagcagaactcaacactttaCTAaagactctctctcactgagctgtGAGGACCAGAGTATCTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAATAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTATGACTGAGGGACATCCTCTGACTCTACACTGTTTATATCGCAGCAGAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCTATAACCTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTTAGTCAGAGcgtcaGGTCCATCACGTGCAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGAGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCAtatcaattaaataaatgcatcatcAATTCACTGAATTATTTCACCTGGTAGCAATAATGTATCATATGAAGTACAAGTAATACACTGAGAAAACTCTTGTACCTTTTGTGTCAGTATCagcatttttaccattttatacATTGATGTACTGGAGctaaacatttactgaagcaaaataataaaaaaaattaaccaaccgacgtttatttcttttgcttttttacg

Function

NR:

description
PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 5-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303799.1 True 2066 mRNA 0.44 9 4315778 4334167

Neighbor

gene id symbol gene type direction distance location
LOC117597051 LOC108261462,LOC108261092 coding upstream 198729 4090797 ~ 4117049 (+)
LOC117597091 LOC108261462,LOC108261092 coding upstream 272909 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 309437 4005153 ~ 4006341 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 335158 3973201 ~ 3980620 (+)
wdr60 NA coding upstream 717264 3586625 ~ 3598514 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 61318 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 83382 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 129771 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 145331 4479498 ~ 4487366 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 405403 4739570 ~ 4746302 (+)
LOC117597097 NA non-coding upstream 197188 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 260548 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 264530 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 339807 3975285 ~ 3975971 (+)
G59115 NA non-coding upstream 369166 3895574 ~ 3946612 (+)
G59304 NA non-coding downstream 221228 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 329444 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 331845 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 335696 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 336813 4670980 ~ 4671460 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 19313 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 254264 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 579455 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 667718 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 685668 3611092 ~ 3630110 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 198754 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 316310 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 373275 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 612970 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 640028 4974195 ~ 5014813 (+)

Expression


Co-expression Network