LOC113547238 (LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092)


Basic Information

Item Value
gene id LOC113547238
gene name LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4479498 ~ 4487366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303811.1
TGTTGAAGTGACCCACACAGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGATGGCTtaactcaaataaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCCCAACAGAACTCAACATTTTGCTCatgactctctctcactgagctgtGAAGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtCTCAGGTTCTAGATCCGGTGGTGGAACAGCAGGAGCGGCTGTGGGTTTGGGAATTTTGTTCATCGCCTTACTTATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagGAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACAACACTTCAGGCTGTAGAAAGTGAACACATTTATGCCACTGTGGATCAGGCAGATACGAGTGGAACAGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACTCTCAGGTCacgaagaaaaagaagacaaatcGGAAGAATGGTGCTGATGCTGAACCTGGTGTTAGTGATGTGACTTATGCTGAGATTCAACTAAAACCAATGAAAAAAGCTAAAAGAATGAAAGAGAAATCCAGTATGGGTGATGATATTGTCTACTCAGAGCTGCACCAGAACATTGAGtgagCCATGTGTCTTTTTACACTGATGAAGCTACAGTCATCAGACAGATAACTGGAGAACCGTGAATCGtgtttgtcttctgtttttcctaAAATGCTCAGCTGTTGAACTTTTAAATTGCTATATTCTAAGCTTGGATGATGCCAAACCTGGCAGCTGCTCTGAGAACTTGCTCACATCATGCATTCACTGATGAACCCTGAAGATATGTGTAAATAACAGAAGATCAGGCCATGGATCAAGTCATTCTAAAGAGTCTAATGCCCCACCCCCCAACACTCAGCTTCCTTGCCCTTATCGGGATGACATCCCAGGAGAATGTGACTTGCCTAAGAGGCTTTACTGATCAAAGAAGTTCTTCACTCAGATGCTCCTTGTTTTCTGAGGTACAACCCCAGTAAACCAGAGAAGGCGGAGAACTCTGGAATAGTGTTTCAATCTCTGCGATCTCTATGCAATCTCTGTGCAATCTCtatatgtgtttttaaatccagatttttTTATGAAGTTACTTGTTAGTCATAGTCCATATTTATCTTGTTAAATATACTTCATGATTAGTAGTagcatatatttataattaagtCATTACAGTTTTTCACAATTACTAACAGGCAGTCTTTGGTTCCAAGTTTACTTTTTAGGAATTTGTTAGAATAACAGTGCTTTATGTGGAACAAACAATAGAATGAACTGCAGTGAGTTTGGGTGTAAACAATTATCACCCCTGGTGAGTatactgatatacagtataaagtatatagtatacactatatggtcaaaagtttgtggatacctgaccatcacacccatatgtggttcttctccaaactgttgccacaaagttt

Function

NR:

description
PREDICTED: Fc receptor-like protein 5 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303811.1 True 2201 mRNA 0.43 11 4479498 4487366

Neighbor

gene id symbol gene type direction distance location
LOC117597057 NA coding upstream 48492 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 71112 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 145331 4315778 ~ 4334167 (+)
LOC117597051 LOC108261462,LOC108261092 coding upstream 362449 4090797 ~ 4117049 (+)
LOC117597099 NA coding upstream 473157 4005153 ~ 4006341 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 252204 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 286820 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 318288 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 392434 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 409602 4896968 ~ 4913622 (+)
LOC117597097 NA non-coding upstream 360908 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 424268 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 428250 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 503527 3975285 ~ 3975971 (+)
LOC117597093 NA non-coding upstream 567752 3905850 ~ 3911746 (+)
G59304 NA non-coding downstream 68029 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 176245 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 178646 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 182497 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 183614 4670980 ~ 4671460 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 85493 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 183033 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 417984 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 743175 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 831438 3639830 ~ 3648060 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 45555 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 163111 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 220076 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 459771 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 486829 4974195 ~ 5014813 (+)

Expression


Co-expression Network