epha4b (epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263)


Basic Information

Item Value
gene id epha4b
gene name epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30593706 ~ 30701045 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303822.1
cagcagcaacagcagcaactcGGACAGAAAGCGACCCAGAgagtgtgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgcctgtgcgtgcgtgtgagtgcgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtatatgtctgtgagtgtgtgtgtgtgagagagagagagagagagagagagagagaggaagggaaatCAGGGATGCAGCGCGCTCCCTGAAGCGCGCAGCCTGAACATGGCACTTTCTCGGATTTATCCAGTCCTCATTTTCctgctgcttttcttttcctgcTTGGGACCGGGCCGAGGCGCGCGGAACTACCCTGATAATGAAgTTACGTTACTGGACTCGATGTCGGCTCTGGGGGACCTTGGATGGGAGGCGTATCCAGCAGAAGGGTGGGAGGAGATCAGCGTGATGGACGAGCGCAACACGCCCATGCGCTCGTACCAAGTGTGCAACGTGATGGAGGCCAACCAGAACAACTGGCTCCGCACTCGCCACATCGCCCGCCATGGCGCTCAGCGCATCTACATCGAGATCAAGTTCACGCTGCGTGACTGCAACAGCCTTCCCGGAGTCCCTGGGACTTGCAAAGAGACGTTCAACATGTACTACCACGAGTCCAACAACGACAACCTGTGGTTCATCAAGGAGAGCCAGTACGTCAAGATCGACACAATCGCTGCAGATGAGAGCTTCACGCAGACCGACGTTGGCGACCGCGTCATGAAACTGAACACAGAGGTTCGGGATATCAGCAACCTGAGCAAAAAGGGCTTCTACTTGGCCTTTCAGGATGTTGGTGCATGCATCGCTCTTGTCTCACTGCGGGTTTTCTATAAGAAGTGTCCGGCCGCCGTGCACAACCTGGCGCATTTCCCCGATACCGTGACAGGGGGAGATTCGGCACTTGTTGAGGTACATGGATCGTGCGTTAACGACTCCGAGGAGTTTGAGTCACCGAAGATGTACTGCAGCGCCGATGGTGGGTGGCTGGTACCGATCGGGCGCTGTATCTGCAAGCCAGGCTTCGAGGAGGGCAAGGACTACTGCCAGCcttgcagaccaggtacataCAAGGCCTCGGCCAAAGACGCCTACTGCACCAAGTGTCCTCCACACAGCTACTCGCAGCAGGAGAAGGCGTCCGAGTGCACATGTGAGAAGGGCTACTACCGCGCTGACATGGACCCTAGATCTATGGCCTGCACTAGGCCTCCATCAGCTCCAGAAAATGGCATCTCCACACTGAATGACACATCTGTTGCACTGGAGTGGCGTCCTCCGCGAGACAGCGGCGGCCGCAGTGACCTCGCCTACAACGTGCACTGCAGGAAGTGCGCACCAGACGGCAGGAAGTGCGGCCCATGTGGAGGCGGAGTCCACTTCACGCCACGGCAGTTCGGCCTCGATGCAACGAAAGTGCTCGTGTCTGGCCTGCATCCTAACACCGACTATACGTTTAGTATCGAGGCGATCAACGGCGTCTCCGATCTGAGTCCGAGTCCAAAACAGCAGCTCACCGTTAATATCACCACCGGCCAGACAGTGAGTGTTATtctgaaagaaaggaagagtaAAGACAGCATCACTCTGGCGTGGCAGGGACCGGACAGACCCAACGGAGTCATCGTCGAATATGAAGTCATCTATTACGAGAAGAACCAGCGAGATCAGAACTACACGGTGCTGAAGACGAAATCTAACATGATGACGGTCGAAGGCTTGAAACCTGGCACCACGTACGTATTCAGGGTTCGAGCTCGAACTGACGGAGGCTACGGCAGCTACAGCGGAGAGATCGAGCTGGAGACGAGCCAGGAAGATATGCTGGCGATTGGAGATCCGAACCAGTCCACCATCTTGGCGGTGTCGATAGCAGGAGGCGTGGTGCTGCTCGTCTTCCTCGTCGCCTGCTTCGTAGTGAGCGGAAGACACTGCGGCTATATCAAGGCGAAACAAGATCCCGACGAGGAGAAGATGCAATTTCAGCATGGCAGAGTCAAATTGCCAGGAAGTAGGACGTACGTCCATCCACATACCTACGAGGACCCAAATCAAGCCATTCGCGATTTTGCTAAGGAAATTGACGCCTCCAGCATCCGCATAGAGAGGGTCATTGGTGCCGGGGAATTTGGTGAGGTGTGTAGCGGCCGTCTGAAGCTGCCAAGCAAGCGAGAGATCTATGTAGCCATCAAGAGTCTGAAAGCTGGTTACACAGAGAAGCAGAGGCGTGATTTCCTGAGCGAGGCGAGCATCATGGGCCAGTTCGATCACCCAAACATCATCCGGCTGGAGGGGGTTGTCACCAAATGCAAGCCGGTGATGATAATAACCGAGTTCATGGAGAACGGATCCTTGGATACTTTCTTAAAGaaacATGATGGTCAGTTCACCATTATCCAGCTGGTAGGAATGCTGCGCGGAATCGCATCCGGGATGAAGTATTTATCGGACATGAACTACGTCCACCGTGACCTGGCTGCTCGGAACATCCTGGTCAACAGCAACCTGGTGTGTAAAGTGTCGGATTTCGGCTTGTCCCGAGTGTTAGAAGATGACCCCGAAGCTGCTTATACGACACGGGGTGGAAAAATCCCCATTCGATGGACAGCACCGGAGGCCATCGCGTACAGGAAGTTCACCTCAGCGAGCGACGTGTGGAGCTACGGTATCGTCATGTGGGAGGTGATGTCGTATGGCGAGCGGCCATATTGGGAAATGTCCAATCAAGATgtaatAAAAGCGATCGAAGAGGGATACCGCCTCCCCCCGCCAATGGACTGTCCAGTGTCTCTTCACCAGCTGATGCTGGACTGCTGGCAGAAAGAGCGAGCTGAGAGACCCAAGTTCAGCCAGATTGTCAACATGCTAGACAAGCTGATCCGAAATCCCAACGCCCTGAAAGAGCTGGCCAACAGTTCCATCTGGGAAGACCCGATCACCCCAGAGTTCAGCGTCAATAGTGTGGATGAGTGGCTGGATGCCATAAAGATGGGCCAGTACAAGGACAACTTCACCTCTGCTGGCTACGTCACATTAGATTCAATAATCTACATCAGTGTAAGTGAGTTGAGTAAGATGGGTGTGACCCTCGTTGGGCACCAGAAGAAGATCCTCGCTAGTGTCCAGAGTCTGCACGCCCAAGGAAGCCATGTGCAAGTATAACAGCTCTGGACAAACTGAAAGACAGatagaagaggaaaaagagagacagtgtggaAGTGTGGAACCCAGAACAGTGCTTCACCATGCCAACCCCCAATCCCGGACGTTTGGCTGCAGCCCAAGAGCTCACAATTTGTGCAGCGGAACCAGAGACTGATTAGCAGTGGAAAATTCAGACCAGACGGATGATGGTCAAACACAAACTCTGATGATTTATGAACATTattgtgagatgtgtacagtcaTTCGCATTGTCGTTTCCTGtcatttgcttcatttttcGAGGTTTGATTTAGATGAATAAAAAGGTGCCTGGGTAGATTTGGACCTAAGGGTGGTGTGTTTGGAGCCACAGTATGGGCCTTGTAGTGTTGTGCTCTGAACATGATAGCAGACAGGAAGTGTGATTTGCAGCCCTGGCTCACAAGATGATGTTTATCTAGACTGGCCATTTTTAACGGTCTTCAGTAATAATTATATGAGGTACTCTTTCTGGTCGGATTCCCTCACTCTCGGCAATATGAGATTATGTTTCACCAGCGGAAGTAGGGCTAGCAGCGTTctggaaatgtaatgtaatccCGGTCTTTGCGGTATTTGCGATTACAGCATTATGGTATGAGGAAACATTGCAATGAGTAGCTAATTTATGGCTAAGATAAGATTTGTCCCATACTGTAATATCCAGTAGAGAATGTCAGgggtttgtctttttttttcagtcagtaCAGTATTAGTCATACTGTGGGCTGGTGTTTGATAGTTAATGCTAGTAATGGTTATGAAAATTAAGGATGGGTTTCCTTCAATGCACCAGTattgtcttttaaaaaatgagtgagaatgtctctgtgtgtggaCCTATAAACTGACTTATTTTGGGTTGGTTTTCATTTCATGACTGCAGAAAAGCGGAACATGCCGTTTGTGTATGTAGAGCACCACGGTACACATGCTATACACGGTGTCTTTGAGAACTTTAAAGGAATTCTCTATgtaaaaacatcaaaataaagGACAGCAGGTATTATATAACAATGCCAGCTGTCATATAATTGATGACAGCAGTGGCTTTTTTTTGAACCaagtattcctttaaagttttaaagcAAATTAGCCTACACCATTAGCTTCGTAGCTAAGATGAGAGCATTGAATCCCAATTAATATAGTAATTAACAAAATCCTGAGTATGGCAAGATGTAACACATAGCGCAACAATGCATGGGAGCGTGATTTGTGTTTAGCGTTATGAGGAACACAATATATATGCAGACTCTTCCCAGGTAGCAAACTGATGCTTGGGTGGCTAGATTGGCTCTCCTTGTACAACGTTTTGTCAATGTTAGGCCAACATTGGCAAGGTGGATTTAAACGTGGATGAATGTGGCCCAATGCTAGCCCAAAGGACAAAATTATATTGGGCAACTGTTGGGAAGTTGGACTTAAAGGCGGCCAAAAATTGGTCCTGGTGGCCCAATTTTAGCCCAATGGACAAAATTATATTAAGCCAGTGTTGGCAAGCTGGATGTAATGGGTGTAAAGGTGGCTAAAAGTCTGTCGACCCGGGTCGCCCAATGCTAGCCCAGTGTATTTTGCAACCCAACTCTGGGCAATGGCTGGCATGGCTGGCAAAGTCAATTTGCTACCTTGGTGATCTCTGAGCATTAACATCGGCCACCATGTCCTTCACCGTATGTttgtttacagcagaacaagaaACGCAACTTACACTCTTGTAAAATAGTGTATAAAGGTGTACAGCGTCGAATTCAAACGAGTGAACAAAAAGCTGTAGAATGTTTGTAAtgtactttatttcattttctgaagaagaaaaagaagatgtGGGACGTATCGATTGGTGGAGCTCGCCGACATGGGATATAACAGAACTCTGGAATGTAGCATGGATGCTAAAGCTTCATCTTTTATAAGCAAGTGACAGTGACTGCGGTTCTTTTTTCACTCCAGTGGTGGCTGTAGCTGCTTGACGTTAGATGCCTTACTAACTgtgctgtttctttctcttcttcctggTAGAGGCAGTATCATGATGAGATATAGTGTACATAGTATTTATCAGAACAACGCCACTGAAAGCTATAGTGAATGTCGGCGCAACACGTCCGGCTTTGTGTTAATTCACCTTTCAGAGGTTGAACCTTCTTTCATTCACAGTATTCAAGCTTGTGTTGGTGCATGTAACTTTGGGGAAAGAGTGATCACAAACCTATTCATGCTGATTTTGCTGCATTTACAACACTACTATTTTTGTACTAGTTCTGTAAAGTATCCATTTCATTTACGCAACAAAAGTCAAATGTAGGTTCCTAGTAGATTCTTAAGAATAGCTTACTAGCAAACTCCTTGTCTTTTAAACCATATGTTTTCTCTTTAGTACTATGGAGCCTAAATGAAGACATCCctacttattaaaaataattcttgcCCACAACTTATTAACATGTGGGAACGATGAGCGGGGTTGGAAGATGAGTGAGGTTATTAAGTTGTGGGGACAAGGTCATTAAGTCATGGTCATGACTTAGTAATGCGAGGGAACGAGATAATTAAAGTCATTGGTATGACTTAGTAATGCAAGTGAACAACATAAGTCATGGCCACAACTTAGTAACTTGAGGGAATGAGATAATTGAGTTATGGCCATGACTTTGTAATATGAGGGAATGGGATAATTAAGTTGTGGCCATAACTTATTAATGCAAGGGAACAAGGTAATTAAGTTGTGGCCATGATGTAGTAACTCAAGAGAAGAAGATAATTAAGTTATGGCCATGACTTAGTAATGCGAGGGAACGAGATAATTAAGTTGCGGTCATGACTTATTAATGCGAGGGAACAAGATAATTAAGTTGTACTCATGATGTGGTAACAGAagggaatgagataattaagtaGTGAACATGATTTAATAATGCAaaggaatgagataattaagtcatGGACACGATTTACAAGCAAgagaatgagataattaagttgTGAACACAATTTAGTAACACAAGAACATGAGATAATTAGGTAGTGAACAGGATTTAGTAACACGAGGGAACGAGATAATGGTTGTGAACACGATTTAGTAACACAAGAACATGAGATAATTAAGTTGTGAACACGATTTAGTAACAAGAGAACGAGATAATTAAGTAGTGAACATGGTTTAATAACATGAGGGAAAGAGATACTAAATCGTATTCACAACTTAATTAACACAAGAACATGAGACAATTAAGTTGTGAACATGATTTAGTAACAAGAGAACGAGATAATTAGGTAGTGAACAGTATTTAGTAACACGAGGGAACGAGATAATTACGCCAAGGCCAcgatttagaaataaataaatgagataaataagTCATAATCACAATTTAGTAATTGGAGGGAATGAGATAATGAAGTAATTGCGACGGTTAGAGAATGGTCATGGTCACCACCAGGCgcttggggaaaaaagctgAAGATTACGCAAGGAGAAATGACGTCTTCAGTAAAGATCTAGCTTCAAATTTGAGTTTCAATCTGATTTCAGCACAATCTTGCCTAATTAATTTGTGGCCACatttaattatctcattcccaCAATTTAATGATCTCGTTCCCTCGAGTTAGCAAGTCATGgccatgcattattttttttattaagtaggAATGTCACCAGTGAGGCTCCTTGTAGTACAGAAATTACCCCAGTGACATTTTCCATTTCTTGCTAATGGTGTAGTTATTCCTTATTTGGTGtactgtaattaaatataaaaccataaTTGCCCATACATAATTTAGGACAAAGCATAATCTGTAACACACTGTGCAATTTCTTTGAAACAATTCCATGTTTGATCTGAGTCTAAATGCTCATTAttaaatctgattattaaaaggtcTGTACATTTTACAGGAgaattttacataaaacaatAGAGTTCATGAAAGCTCCTGAGGGAAAACGAGTTTAAATTGCTAATGTCTCctatgttattatttatttgaggtacaatgacaattttttaattattattgttttgctttttgactttttttcacatattaacACTAAGTGTAAGCAAATTAATCATTCGTTCCAGCTCAAGCACTCTTAATGACACTTATTTACTGACTGCAAACgaaagagaaagacacaaaCTGCAATATTCATTTGAAAAGCtgattctgtttttcatttttatgttcttAAGTCTACTAgaggagacagacagtgtgGTGATTAAGATTAAGTGAACATGGGATATATTTTGGGAGGCATCAcgagaccaaaaaaaaaaaaaaaagaagtgaccATGTGATTTATTGATCCAAATTTAAGAATATAGTCACAATCGATAGGGCGAGTGTCCAAAGATGGACTGAacctacgttcacactagcaccATTCATACGTGTGAGACACAGGGCCGTGATTTCTGAGAAAAAGTGACAGCGTGAaaacatttgaattgagattttctcaattctatccAAATTAGGATCCAAAAAATTCAATGGAATGATACTTTGGACCAATCCTCTAGCCTGaggtttcttcagttccccacttaCAACCTGCTCTTAAATCTACGAAAAACTCATACCTGTGGTTTTCTCCTATCCCGTCATATACAGTCTCTCGATTAAACCTTTACCgaaacattacaaagaaaaattaaactCAGAAGCAAGTGGCGGAGATCGTTGACGCCTCTGATGATTggatgtagctagtacagttttctcgctttgctaatctgttAATAAGGCTAGTACGAAGCCAAGCACGTAACATGCAAgtcaaccaattttcacaccaATTAGTAGCTAACTGTTAACAATTAACCAGTTAGCTGTAGACTGTACATTTTGGCTACTACCGTTAAATAAAAaagctggacaggccacgcccactatCGACAACCGTAGCGGTCGCTACACATATGCCAGAGACAAACCATGGGGTAGTTTTTCCAATCCTGTTCCCATGAGCGGATGTGTTTTCAGCAGCCCTGAAAATATCAGCAGTGGTTTTTGTTGCTAAAATATTTGTACATGATTTAGCTCGAAACATTTTCATGGGGTGGCAGCCAtgactttttcaaaaaaatgtaaattttattttgattatatttagTAAGTTGTTTGTGTCCAaatatgtgaagtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
epha4b Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within negative regulation of axon extension; negative regulation of collateral sprouting of intact axon in response to injury; and regulation of myelination. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; immature eye; intestinal bulb primordium; nervous system; and pharyngeal arch.

NR:

description
PREDICTED: ephrin type-A receptor 3-like isoform X2

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303822.1 True 8376 mRNA 0.44 19 30593706 30701045

Neighbor

gene id symbol gene type direction distance location
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 370386 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 508845 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 536986 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 550695 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 556640 30025069 ~ 30037066 (-)
LOC113540512 NA coding upstream 19987 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 589776 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 652857 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 659602 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 678428 31379473 ~ 31502378 (-)
G73834 NA non-coding downstream 115472 30477403 ~ 30478234 (-)
G73684 NA non-coding downstream 396130 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 402585 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 454834 30128728 ~ 30138872 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding downstream 490836 30101440 ~ 30102870 (-)
G73977 NA non-coding upstream 69052 30770097 ~ 30771174 (-)
G73974 NA non-coding upstream 76714 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding upstream 135307 30836352 ~ 30838110 (-)
G74047 NA non-coding upstream 329344 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 355440 31056485 ~ 31116436 (-)
G73619 blvra other downstream 571181 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 862849 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1017979 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 1421785 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1708741 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 40482 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 72404 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 546015 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1169473 31870518 ~ 31871874 (-)
G74547 NA other upstream 1173264 31874309 ~ 31874827 (-)

Expression


Co-expression Network