Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117597105 |
| gene name | LOC108267929 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 10111162 ~ 10143429 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: butyrophilin subfamily 1 member A1-like isoform X7 |
| id | description |
|---|---|
| K06712 | BTN, CD277; butyrophilin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034303827.1 | True | 1343 | mRNA | 0.43 | 9 | 10111162 | 10143429 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540311 | LOC108267981 | coding | downstream | 4633 | 10095779 ~ 10106529 (-) |
| LOC113540363 | NA | coding | downstream | 16046 | 10093747 ~ 10095116 (-) |
| trmt10b | trmt10b | coding | downstream | 57948 | 10046572 ~ 10053214 (-) |
| intu | intu | coding | downstream | 87385 | 9997315 ~ 10023777 (-) |
| aadat | aadat,LOC102781018 | coding | downstream | 118295 | 9980997 ~ 9992867 (-) |
| LOC113538503 | LOC108261535 | coding | upstream | 24488 | 10167917 ~ 10189928 (-) |
| LOC113547269 | NA | coding | upstream | 88245 | 10231674 ~ 10236612 (-) |
| LOC117596978 | LOC108267983,LOC108267929 | coding | upstream | 165222 | 10308651 ~ 10320200 (-) |
| LOC113540334 | LOC108267980 | coding | upstream | 190040 | 10333469 ~ 10344131 (-) |
| f13a1b | LOC108267979,LOC108411459 | coding | upstream | 202851 | 10346280 ~ 10359403 (-) |
| LOC113540700 | NA | non-coding | downstream | 69383 | 10041567 ~ 10041779 (-) |
| LOC117597227 | NA | non-coding | downstream | 70468 | 10040482 ~ 10040694 (-) |
| LOC113540709 | NA | non-coding | downstream | 71575 | 10039380 ~ 10039587 (-) |
| LOC113540720 | NA | non-coding | downstream | 72396 | 10038554 ~ 10038766 (-) |
| LOC117597222 | NA | non-coding | downstream | 73805 | 10037145 ~ 10037357 (-) |
| LOC113540369 | LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 | non-coding | upstream | 58802 | 10202231 ~ 10211232 (-) |
| G62108 | LOC108267978,LOC108411458 | non-coding | upstream | 220583 | 10364012 ~ 10364892 (-) |
| G62109 | LOC108267978 | non-coding | upstream | 224892 | 10368321 ~ 10370563 (-) |
| G62125 | NA | non-coding | upstream | 331341 | 10474770 ~ 10483928 (-) |
| LOC117596989 | NA | non-coding | upstream | 354092 | 10497521 ~ 10499087 (-) |
| LOC113540372 | NA | other | downstream | 30925 | 10078688 ~ 10080237 (-) |
| cxcl19 | LOC108267987 | other | downstream | 37933 | 10070406 ~ 10073229 (-) |
| G61900 | NA | other | downstream | 69396 | 9605727 ~ 10041766 (-) |
| G61972 | actn3,LOC106577856,LOC106608893 | other | downstream | 305844 | 9776278 ~ 9805318 (-) |
| G61537 | NA | other | downstream | 772417 | 9337826 ~ 9338745 (-) |
| trnan-guu_9 | NA | other | upstream | 343239 | 10486668 ~ 10486741 (-) |
| trnan-guu_10 | NA | other | upstream | 346919 | 10490348 ~ 10490421 (-) |
| trnan-guu_11 | NA | other | upstream | 348161 | 10491590 ~ 10491663 (-) |
| trnan-guu_12 | NA | other | upstream | 351736 | 10495165 ~ 10495238 (-) |
| gba2 | gba2,LOC107749818,LOC107741462 | other | upstream | 394816 | 10538245 ~ 10562006 (-) |
