LOC117597107 (LOC108267981)


Basic Information

Item Value
gene id LOC117597107
gene name LOC108267981
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10270843 ~ 10280812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303830.1
GCTCCCTGTAGGCTGCAGAAATAAAAACGGCTTCAGTCTCACAGAGAGATCAGCAGATCCGCAGATCGATCACAGCCAGAAAGACTTTTCTAACAAGTTCAAAAAGCGTCTCATTACAACAGAAGCTGCAGAAAAAGGGGCggagtaaaaaagaaagagactgaAAGTGAAAGTTGTCTCTGCTGCTGCATTACATCCGGATGCAAGTGAGAAACAAACAAGCGGTGGTCAAAAAGttataatattttcattcagtatGTCAGACTATCAGTATGCTGTGCTTTTCGAGGCAAACAACCTCTCAGatggagaaatgaaaaagattaGAAACTATTTTAAGATCAGGCGGCAGTCTGGAGGAGGAGAGTGTGGAGAagtggaaaaagtggaagaCAACACCTACAAGATAAGCTTCTCGGACAAAACAGcacagGACAGAGTATTAAGCAAAAGTGATCATGTAATCAATCTCCCTGGACGAGGAAATGTACACATCCTGATAAAACACCATGACATTAAAGAAGAGAAACAGCTTCTACCACATTCCACATCCGATCAACAAgcCACTGGGGACACACCTATGCAGAAAGTTTTTAAACTAGACCCATACTTACTGCACTATCTGAAAGACAATTCAAGAGCAAAGTCAGATTTGGAGGAACAGCTCTCCTCTTTGCTAAGCACCTTTAAGTTAGACATGGTCACTGAGGCAGTAGTGGTAATGAGGGATGCAGTCCAAACAGGTCAATATGATGTTGTCCAGCAGAAGTGGGAAGCAAAGGTGGATTTATTGTTCTCGGACCTACAGCATCGGTATGCCATCCATTTTGAGGTGGATCCTAAGAGGTTAGAGATTCTACAAAAAAACCCTTTCCTATTGTCACAAAACATTGGAATCTATGAAGAAAGTGGTTTATCTGTGATTGTTGGAGAAAATAAGGAAGTGGAGAGGTTTTTTAAAGTTATAGATGCTTTGCAGTTGCAGCAGCAAGCCCGTAAAAAAGAATGCCCCGTGTCTGAGACACAATATGAACTTGTGAAAGAGCAGTTTCAACAGGAGATAAAGTCAAAATTTTCAAAGATCGAGATTACACAGGAGCAACCTGGCTGTCTTGTCTTAAAGGGTCCTGAAGAACAAGTCCATTCAGCAGCAACAAAGCTTAAAGAGTTGCTGAATCAGATTCAAGAGAAAAGAATCCCACTGCCTCATCCCCTCAAAGCATTTTTGTCATCCAGTGGTGCTATTCAGATCTTTCAGACACGATTTCAGCAGAATCTCTGCAGTCCGGTCTTGCTTGAGGCCACAGGATCCAGCTCAGATTTGGTTCTGCTAAGTTTGTCCACAGGCGCACTTCAGGAAGCAGCAACTGCAATACAGAGAGACCTGTGTGTGGAGACGGTCCTGCTGGAGCAAGCTGAATCTGAGTCACCAGGAATAGATACTTTGAAGGAGGCTCTGAGTCCTGCATTACAACAGGCTAATCATGGAACTTCTAAAGTGGAACTTAGCTACGTGCCAGGGCCAGGGTCTGACCCCAGAATGAAGGCACAACTGGTGGGCTACAGCACTGaagtcaataaattaaaaaatattatacaggAATTCAAGCAAAACTATGTGGAATACAGTGACACTGTGCCACTACCATTAGCAGAACTGGGGGATAATTTCTCTAAACTTCTGTCACTGCTAGGTGTGACAGCAACTGATGTAAATCTAATGGCTACATCCTCACCTGTAGCATGTGTCTACCTCTCAGGACCTCGCTGTAAAGTAAttgatatgaagaagaaactgCTTTCATCATTTAGCCATCTTATATGTCAGAAGATTTCAGTGGATGGTCCTGGAGTCATGCAGTTCTTTCAAGAGGAAGGTCTAAACACACAAGAATTATTGCAGAGCTCCTGTCAGGTTCTAATATCCCTCAAAAACAATGTCCAAACAGGTGCTGCAACAGCCAGAAACACAGCCTTTACCAGTCTCCTGCCATACCTGCTTCTGTGTCACTTCCAAGTTACTCTGTGGCCCTGGAAATTGTATTTGGAGGTCTTGAAGATCAGCAgTTGCCCCATGCTGAATACAAACTTGACCTCAACTAATGTTGGGAAATCCTTGCTAAATAAAGCAGGGCAGCAGTTTAAGAGTAATTTTGATGCTGCCAAAGGAAGATGCAGAATTACTCCTGGAGATGTGCTGGAGGTAGATGGGGCTCCATTAGGGTGCCACAAGGTCTTCTTTATTGAGTGTGTACCTTGgattggaaacacacacagcagtgaaaaGGCATTACGCTGTGGACTTCAACGAGCTCTGGCAATTTGTGAACAGCAGGCATGTAGCTCAGTCGCTTTTCCTGTAATTGGACCCGTGGCACTGGCTGTACCATTACAAAATGCCGCTAATATTCTGACAGGAGAGATTGGGACTTTTGGCCTGACTGGATCCATTAGTACTCTCAGGACCATACGAATTGTAATAATGCCTAATTATCCAGATTCTGAAGAGATTTACCTGGCAGTCAATACTGGGTTAAATGCAATAATGGTGGATCATACAGGACAGGCTGCCTTTCAGTCTCTAAGCTCTGAAATTGATGAAATCACCATCCCAGTGGCCAGGTGTCAGCTCCATCTGATATTTGGAGACATCAGCAATGAGACTACAGATGTCATTGTAAACACCACAGACTTTACTGACTTACAAACAGATGTGTGCAATGACATCCTGACTATTGCTGGACCACAAGTCAAGGCTGCTCTAACAGGAGTGCAGGTAAAGAAAGGAGAAATCTTTATCACTCAGCCTGGAGAATTCCCCTGCAAGGCGattatgcatgtgtgtggagAAAAGGATACAGATGTTATTAAAAAACTGGCACGAGATATCCTGCTCAAATGTGAGCACAGTGGCTACCAGTCAGTGGCCATTCCTGCTATTTGTGCTGGTAAAGGAGGGTTAGATGCCCGTCTGGTGGCCCAGGCTATTCTCCAGGGTGTGAAGGATGCTACAATACAAACTAACCTCAACAATGTTAAAAGAATTCACGTTGTTTTGATGAAAATCCATGTTTTTTTGGAGTTCAAAGCAATGGCACAGCAGATCTTTGGCAGATTTACCCAGATGACAGCTCCTTTGCTGTTCACACCTCTCAGACCTGCTCCATCTTCTTTGACCCTAGACCTTAGCTCtcttgttcagtctcttccaGACCAGCATGTCACAGCTGAATTTCTTGTAGTGGGGTTAAATGGTGATAATGTCTCAAGGGCCTGTCGAGAGCTTCATCAAGCATATAAAAGCCACTGCTCTTCTCATTTTGTTTCACAAGAGGAACTTAAACACTTCACTCCAGCTGAGGTGGATGATATTATCAGTAATGTGACTTCTCTGGGTATTCGGATAAGCCAACGTGGCCCTGATGGGTTGGAAGTTAGTGGACTGACAAAAGGGGTAAATGTGTTCACACAACTAATAATGAGAGGCTCTTGTCAGGCAGGTTTTGATTTTCCACTTTACTGGGACAGCATGACCACAGGGGAGGTTCTAAAGGTGGTTCCTCTGCACTCCAGCTCTGCTGAgtacaaaaaagtgaaaagtgactTCAAGAGAACAGTCGCAAAAGCAGTTGTCAAGGTGTTCTGCAGTATTGAGCGCATTCAAAATGTGAATCTCGCGCCGGCCTCTGAGGTTCGTGTAGAAAAAGAGCTGCAGAATAAGAATGGGACACTGATGCCTGCTTCTATACAGCGCAGTAACTTTAACCGCAGATTTGCTGGACAAAGCGGAACCATGTATGGACTCGGGACATACTTTGCTGTGAATGCCAGCTACTCGGCCAATCCCACGTACTCTGCACCTTCCACAGATGGGACACAGCTCATGTTTGTGACACTTGTACTAACGGGTCATTACACCCAGGGAAAAGGTGACATGGTGGTTCCCCCTCCTCGCTCATCACAGGATCCTAATGACAGATTTGACAGTGTGGTCAACAACATGCAGACACCCAGTATGTTTGTGGTGTTTCATGACTGCCAGGCCTACCCAGACTACCTCATCACATTCAAATGAGGGCACAGCTGTAGCTCCTGGCTAGATTCAGTATAAACTCCagtgtttttaacaaaagaCCTAATCACCAGGAATATGCCAGGTTTAAAAAGTAACCCTATAGAGCATATTTTTCTACTATCAGCTGGGCTAAGAGTGGTCCTTGGGATTAACAGTAGGCCTGTCTGTGCTGACTGAAGTGCTTA

Function

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303830.1 True 4260 mRNA 0.44 15 10270843 10280812

Neighbor

gene id symbol gene type direction distance location
LOC113538341 NA coding upstream 4085 10236752 ~ 10266758 (+)
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding upstream 46240 10223782 ~ 10224603 (+)
ino80b ino80b coding upstream 273795 9992956 ~ 9997048 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding upstream 304011 9927321 ~ 9966832 (+)
nit1 nit1 coding upstream 344989 9919860 ~ 9925854 (+)
LOC113540310 LOC108267978 coding downstream 82178 10362990 ~ 10370654 (+)
si:ch211-1o7.2 ankrd53 coding downstream 111563 10392375 ~ 10396736 (+)
trnak-cuu_4 NA coding downstream 193806 10474618 ~ 10474690 (+)
trnak-cuu_5 NA coding downstream 195045 10475857 ~ 10475929 (+)
trnak-cuu_6 NA coding downstream 196277 10477089 ~ 10477162 (+)
LOC113540370 NA non-coding upstream 174775 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 223292 10046592 ~ 10047551 (+)
G61689 NA non-coding upstream 301943 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding upstream 352060 9914235 ~ 9918783 (+)
G61638 NA non-coding upstream 678100 9578364 ~ 9592743 (+)
LOC117596987 NA non-coding downstream 9062 10289874 ~ 10290684 (+)
G61842 NA non-coding downstream 77002 10357814 ~ 10358964 (+)
G62131 NA non-coding downstream 216318 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 218463 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 250159 10530971 ~ 10531044 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 4564 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 388130 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 438563 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 496794 9758460 ~ 9774049 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 900358 8724545 ~ 9370485 (+)
trnak-cuu_13 NA other downstream 193956 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 206090 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 207328 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 208553 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 209766 10490578 ~ 10490650 (+)

Expression


Co-expression Network