LOC113539958 (LOC108434586)


Basic Information

Item Value
gene id LOC113539958
gene name LOC108434586
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16278990 ~ 16284284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303836.1
TGAGCAAGGGAGGAGGGAAGACAACATAGATAAGAAGTGAACACCCTAATTAAGAAGCTTTCCTAAGATTAATCCCTGCATTTGGAGGAGGTAAGACTGGGGGATCTACCAAAAGGATGTGAATACTGAATAGTATAGATCTCAACTGACAGgcacaggggaaaaaataaaattaatcactCCAGAGAGCAGTGACTATAGTTAACTATTTAATGGATTTTTAGCATATGAATCACTGATAGTAAGGGTAAAGTAGAAACCTGGAAATCTTAACATTTTTATAAGTCCTACCTTAgcatcaatttaaaattttcttttttgttattgttttactGTGAAGATATTTTGATTGTAATAAAATGTCTTTCATGGCAAGTGCTTTGGCAATATTAGACTCATGGGTATGAAAGACTGTACATAGAACCACTTTTGGTTCTATGAGAATGTATAGGAATTGAGATGTATAGGAATAAATAGACTTAAGTGCACACTGGTGATCACTTAGATAAAGCAGATGTACTTCAGCCAGAGCTTCATTCCTTTATCCAAGCACCTGATAAGCTTCAATTAGACATCTGTTAACCTATTAAATTATCAGCTGTGGTCTGACATTTTAACAGTCTTAACTCTTAGCAGTTTTAATTCTAATCAACCTTAGTCTAAATATGCATGTAAAGGTTACACAGTTTTTTGAAATAGACACTGAAGTCTCAATTGTTAGAAAATACTTCCAGAGAAACCTTACAAAACTTCCATCCAAGCCCTGCACTTAACAGATATTCTGACTCCTTAACTTTTTCTTACTTATTACACTTGCCTGTGCTCCTCTTTCCCCCAACCCACTCGCCTCTCTTTGCTTGCCTCAACTCTTACATTCTTTCCCTTCTTCCACCTCACTCCACTTTCTAAATGTATGTAGAGCTATGCTATGCCCGGGTAGCTTCCTCTCTGAGAAGCAGTTCCAGTGCTCCATCTGTTTAGATGTCTTTGACAATCCGGTCTCCACCCCATGCGGCCATAGTTATTGCATGAACTGCATCGGACAGTACTGGAATGGAGTCAAACTCTCTCAGTGCCCATTGTGCAAGGAAAGCTTTAAGAAGAAACCTGAGCTCCACATCGACCGCACTCTTCGTGAGATCACAGAGCAGTTCAAGAAGATGAAGGGGGAAGCTGGGGCATGTGGTGGGCTTCAGTTTAGCAAAGAAATATGCTTACATTGTGCTGAACAACCTTCCATGCATAATGAATGTGGTGTGGACTGTTGTCCTTCCTGTTTTGTCATGTTCTGTGTACCACGTTCAGTGCAGACTCAGATTAACattacagaaacaaaaatacaggaaatGATTGGACAAAGGCAGAGGAAAGTAGAGGAGATTAAATTATCAATGGAGATAAAAATGTCTGCAGAAAGAGAGATGCAGCACAGCATGCGTGTTCTGGGGCACTCTGTTGAGCGCAGCCAGGCCGagctgctgaagatgaatgaaatggGACAGCACTCAGCAGAACACAAGGCAGAAGGAATGATCagagagctggagctggagctcaCAGAGCTGAGGAAGAGAAGTGCAGAGATGGGTAAACTGGCCCAGAGAGATGACTACATCAGTAGACTGAAGATAAAGAAATGCAGGAATATGCAGCTATGTGAAGACTATATAAAAGTGGACATGATCTTGGACCCCAGTACGGCCCATTCTCTTCTCATCCTGTcagaagacagaaagaaggtGAGGTGTGGTGACAGGCACCAACTCCTTCCCAGCAACCCTGAGTGCTTTGATTGTATGGGGTGTGTCCTGGGCTGAGAGGCTTTCACTTATGGTTGGCACTACTGAGAAGTGGAGGTGGGAGGCAAGACAGACTGGGACTTGGGGATGGCCTGCCACTCTATAAATAAGAAGGGAAAAGTGACTGTCACCCCCAGCAATGGATACTGGTTCCTTACCCTACGAAATAACTATGCGTTTGGAACAGACCTTTCCCTCACCCTTCCCCTTAACCCAAAACCCAAAAAgattggtgtgtttgtggactATGAGAAAGGGCAAGTTTCTTTCTATAATGTGGAAGCTAAGCTGCACATctacacattcacagacacgtTCTGTGAGGCCATCTACCCGTTCTTCAGCTCCTGCACTAACAAGTTAGGCAAGAATGAAGCAGCACTTGTCATTACACCTGTTTTGCTTCCTGTCTGATGGATATGGTGGctgaaaactgttttgttttcagttttcttcaGTACAGTATTTAACTCACCAGAATGATACTTGTATGATTTACAGTGTGTTCTATCACTTATTTTCTGTGCAATATAGTTCTGTCTTTATACAAAAAGAATctttataataacagcaatgTTGTAATGTAAGTTCTATACTATGAAAGTAATCTA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303836.1 True 2410 mRNA 0.41 6 16278990 16284284

Neighbor

gene id symbol gene type direction distance location
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding upstream 1496 16264254 ~ 16277494 (+)
tkfc tkfc coding upstream 14793 16256665 ~ 16264197 (+)
LOC117597006 LOC108267494 coding upstream 74788 16197701 ~ 16204202 (+)
LOC117597111 LOC108267494 coding upstream 126553 16145424 ~ 16152437 (+)
LOC113540526 LOC108267491 coding upstream 139120 16135364 ~ 16139870 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding downstream 7535 16291819 ~ 16298721 (+)
mus81 mus81 coding downstream 15657 16299941 ~ 16310157 (+)
fis1 fis1,LOC108434607 coding downstream 59060 16343344 ~ 16349401 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding downstream 68477 16352761 ~ 16355963 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding downstream 71957 16356241 ~ 16366191 (+)
G65335 znf638 non-coding upstream 47875 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 215529 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 223845 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 277529 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 408219 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 107845 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 146177 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 147661 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 230353 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 285403 16569687 ~ 16577737 (+)
LOC113540079 sh3tc1 other upstream 239006 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1620054 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2009650 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2559536 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2716724 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 25929 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 83672 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1051213 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1325208 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1715874 18000158 ~ 18010962 (+)

Expression


Co-expression Network