LOC117597112 (snapc2)


Basic Information

Item Value
gene id LOC117597112
gene name snapc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17617159 ~ 17620019 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303837.1
ACTTCTGAAACTAATTCAGATATTGTGCATTAGTTTATCATGTTGTCTCATATGCTAATTAGCCTAATACTAATTAGTAATACCAGTATGTACAGTGCTGTGTTTGCTTTTAGATACAGAACATGATAAAGTTTTTGAGGAGGTGTGTGGTGCAGCGGGTGTATCTGCAGGTCCAAAAACGGAGACGTGaggaacaaaacaacaaagtaCCAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGTCCTGCAGCCTCCACCACACAGATCCTCCACGTACCACAGACTCTCAAAGTACTCTAGCCAGCGGCTTGTGCACTGTGTGCCTAAATCCCATGCTGGCTTGCCTCTTCCAACCAATGGGGATGAAGAGTGTAGTGGATTTTGAAAAGATATACCAATTTATAAGCAACATCATTCTCAAAAAACACACTCAGCCTCTTACTGCTATGGAAAGTGCAGTGCTTTTGGACCTGTTGATGTCTTTGCCTGAAGAGCTCCCCTTGCTGGACTGTAAGGAACTGCAGCATCATCTGCTTCAAGTTCACACCCGTCTGAACACACCAGCAGTGAGCCACAGCACAGATCAGAGACCTGCAGTTGCCAATTCTGCTTCAACTAGAGTAACAGAACAGCAAACCTCCAGAGCTGACAAACATGCTAAAGGACCTGATGTTTCTTTACAAACACAGAGTGTACCGTCTACAGGGGAAGAGAGTGTTCAAAAGGGAGAAGTAACTGAGCAAGCAAAGGCTACAGAATCACCATTAGCTGCTGGAGATTTTGCAGGCCAGTCACCTGCAATGAAACTGTCAAAAGACAAAGGTGATTGGGCTACTGCTGGCTTGTGTCCACTAAATCCATTCATGGTGCCAGTAGCCCTCCTGAAACGGCAGTAACCCAAGGAGAGTGCAAAAGCAgctgtgtttttctgatttCAGAACCGTTGATGCTGACGttggtgttttaaaatgatttcatttagAAAATAATATACATCTGCCTTGTTTCAAAGTGCATTTAATGTGATGGCATCAGTGAAATAACCTTACATAATTTAATGAAGCTTGTAAGTACAAATTAGGCCTTTAGTATACATTgcactgaaaacatattttacatatttcaaaacatattttacatatttctaATGCACTAGTGAAGTGGGTGTACACAAGaacattaatttataaatgtgtgctGGATTCACTATTTGAagtttttgtctcttttagttACTAAAGGACACTTTTGTGCACacagttgtgtttatttaataaatatctatTTTTTAGTTAATTTCTGTTGCATTTGTCATTCTAGTGTGctgtttacagaaaatgttcgtttttacagaaaatgtgaCTGGTTTACTATGAGAAATGTGTGGATCAGGGAAATGTGGCTCATGAGTCAAGTAGTAAAGAAGTTGAAAT

Function

symbol description
snapc2 Acts upstream of or within intrahepatic bile duct development. Is expressed in brain and liver. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2).

NR:

description
PREDICTED: snRNA-activating protein complex subunit 2 isoform X3

GO: NA

KEGG:

id description
K15209 SNAPC2; snRNA-activating protein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303837.1 True 1502 mRNA 0.40 4 17617159 17620019

Neighbor

gene id symbol gene type direction distance location
LOC113539941 NA coding upstream 7681 17604307 ~ 17609478 (+)
LOC113539911 NA coding upstream 30863 17573590 ~ 17586296 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding upstream 93820 17520276 ~ 17523339 (+)
si:dkey-6n21.12 LOC108267749 coding upstream 96993 17508425 ~ 17520166 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding upstream 116263 17426669 ~ 17500896 (+)
LOC113539967 NA coding downstream 17529 17637548 ~ 17642740 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding downstream 35301 17655320 ~ 17664976 (+)
si:ch211-196f2.6 LOC108267771 coding downstream 53529 17673548 ~ 17681486 (+)
LOC113539928 LOC108267768 coding downstream 74629 17694648 ~ 17698271 (+)
LOC113539938 LOC108267768 coding downstream 80459 17700478 ~ 17702323 (+)
G66124 NA non-coding upstream 38213 17577104 ~ 17578946 (+)
G65933 NA non-coding upstream 114514 17410994 ~ 17502645 (+)
LOC117597048 NA non-coding upstream 132237 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 176787 17431077 ~ 17440372 (+)
G65927 NA non-coding upstream 213280 17402559 ~ 17403879 (+)
G66144 snapc2 non-coding downstream 29346 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 83215 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 120056 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 152534 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 253380 17873399 ~ 17877074 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 215771 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1246202 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1297993 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1577175 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2958223 14632030 ~ 14658936 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 380139 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 493414 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 577293 18197312 ~ 18208564 (+)
G66864 NA other downstream 1236437 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2370665 19990684 ~ 20067220 (+)

Expression


Co-expression Network