LOC113540483 (lpin2,LOC106916092,LOC103149806,LOC106945104,LOC108230461)


Basic Information

Item Value
gene id LOC113540483
gene name lpin2,LOC106916092,LOC103149806,LOC106945104,LOC108230461
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21536003 ~ 21551810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303841.1
CGGAGAGGAGTGTGAGAGCTCTGACAGGCGAACAGGAGCTGAACACAGTCTCAGCAGGCTCCAATGGCAGCTTTTTCACTTAGTGTGAACTACTTTTATCTTTAAAAAGGAGAATGTAAAGGAAAGAGACTTGAGGCTGGTCTACAGGAGGAAACAAGTGACACAAGTTGGGTACCTGTTTAGgTCAGCAGTATGAACTATGTGGGCCAGTTGCTGGGGACAGTCCGAGAGCTGTATAAAGGCCTAAATCAGGCTACTCTTTCTGGCTGTATTGATGTGGTGGTGGTGAAGCAGCCGGATGGATCTTTCCAGTGCTCACCATTCCATGTCCGCTTCGGCAAGCTGGGAGTTCTGCACTCCAGAGAGAAAGTGATTGACATTGAGGTTAATGGGTCACCAGTGGATCTGCATATGAAGCTGGGCGATAATGGGGAGGCTTTCTTCGTCCAGGAGACCAGGCATGCTGATGAATTGGTCCCTGCTCATCTGGTTACTTCACCAATCCCAACTGAGGAACCAGCATTCTGGGGCAGTGACTGTCACACATGTGAACCATGCCATCAGAACCGAGTAACAGAGGATGGAGGGAGTACcttgatgaaaaagaagaaaagaagaaagagaaaacacaaaactgaGCAGAGGAGAGAAGAGTCAGAGATGTCATCAGTTTGTGCACAGAGGGATTCAGCAGAACTCAGACAGCATCTTCCTTCTCGCTACATAGATAACTACCCACTGTCTGATGGAGACTGGGCTCCAgacagTAGGAGGGTGTCAGAGCCCAGCTCTCCTAAGAGTGACTCAGAACTGGCAATAAGGTCATCCGAAAATGTCATCCACCATCGCAACCATATGCagtggacatggggagaacttCCAGAAGCCACCAAGTTAAGTTGTAGGGAATGGGTGGAGCCTTTGAAGACGGTCAGCATTACACCAACAGACAGTACTCACTTTTGGGTCATTGACAGCATAAAAGCTATGGGAACAGGGATAGAGCAGAGAAAAGAATCTGTTCAAGCAATCATCAAACCTCAGCCTCAACCTCCCACCTCCAAACAAGAACCTCAGCTACAACCACAATCCATAATAAACCAAGCAGAtgttaaaatacacaaactacCACCTTTTCCACATGGATCAGAACCTCATTATACAGAACCTGACTCTGATCCTCAAGCAGAAGCAAACAAATCAGAGTCTTGTACCTACAAGTCACAAACTCATGTGCACCACATAGAGGGTCAGACATGCAGCCTGGaccaacacacacccaaaactgaaaaatatacCTCTAAAATCAGATCAAACCCTGGGGTCAAACCCcCTGCTGCTGCTCATCTGCTGGGAGACAAACCAGACACAGCCTGCGAAAGGAAAGGAgtgaggaaaaggagtcagcaTCAGGGACCAGAGGATATTTACCTGGATGATCTCACTGCTTTAGAGCCACATGTTGCAGCTCGCTACTTCCCCAAAAgtgagtcagTGGAGCAGTGGGAGGAAGGGTGTGTTCGATCTGGTTCTCCTCAGTCAGTGGGCAGTGCAGCCGCAGACAGTGGGACAGAATGTCTGTCTGACTCCACGCTGGACCTGCCAACCGTATCACTGTCACTCTGCGGAGGCCTTGGAGACAATGCTCATGTTAATAAGGagaAGTTTTTGGAACATATTGTCACCTATGAGCAGTTTGTTGACAACCCAGGCATCATTGACAACCCAAACTTGGTTGTAAGAATTGACAACAGATACTATAATTGGACTCTGGCTGCTCCACTTATTCTCAGTATGCAGGCCTTTCAGAAAACTGTTACCCAAGGTTTGACTTCAGCAGCTGAGGATACTTGGGTGAAACAGAAAATGCCAAAGAAGACGAACCGCTGGTGGTTCTGGAGGAAGAACAGTGTACAACAGTCAGAGACCCAACAAACGATATGCAATCCACTCAGTGGAAACCTGCACCATTATCATGACAGCCCTGATCCACAGCAGATGGCTGCAGCAGACTCGTCCACTGATGAAGACTCTAAGGAGCTGAGCACAGCTGCGTGTGCTGAGTGTGTACAAGCagcaggccacacacacacacactcctacaagAAATCATTACGGCTCTCATCAGATCAGATTGCGAGTCTGGGTCTTAAGGAGGGGCCGAATGATGTGGTGTTCAGTATCACGACGCAGTACCAGGGCACATGTCGCTGTGAGGGCACCATCTATCTGTGGCATTGGAATGACAAGATTGTCATCTCTGACATCGATGGCACCATCACTAAGTCTGACGTTTTAGGACATTTCCTTCCCCAGTTTGGAAAAGACTGGACACATCAGGGCATTGCTAAGCTCTACCACACTATACATGAGAATGGCTATAAGTTCTTATACTGCTCAGCACGTGCAATTGGGATGGCTGGTATTACTAGAGGATATTTACAAGGGGTTAATGATAGTGGCACCATTTTACCACAAGGGCCTCTCATGCTCTCACCGAGCAGCCTGCTTTCAGCTTTCCAcagGGAGCTGATcgagaagaaaccagagaagTTTAAGATCGAATGCTTAACTGACATCAGAAATTTGTTCCCTTCAAACTCTCAGCCTTTCTATGCAGCCTTTGGCAACCGCAGCAACGATGTGTTTGCCTACAAGCATGTGCAGGTTCCTACATGCCATATATTCACAGTAAACCCTAAAGGAGAGGTCATTCAGGAGCTGACCAAAGGCAACAAGACATCGTATAGTCGCCTCAGTGAGCTGGTGGATCACATTTTCCCCTTGGTTGGCAAAGAGCAAAGTGCTGCCCTATATTACCCAGAATTCAGTTCCTTCTGCTACTGGAGGCAGCCTGTCACTGAGATTAGTCAAGAAGATATCCTGTTACTCTGATTGGCAGAGACTGGAATTGATTTTAGCTGAAACACTGTTACTGTTTGTAATGATTCAAACAAATGAAGTcaaatttatcaaatatttctctttatgaGATCACAATAAAATaagtatataattatta

Function

symbol description
lpin2 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

NR:

description
PREDICTED: phosphatidate phosphatase LPIN2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303841.1 True 3022 mRNA 0.47 21 21536003 21551810

Neighbor

gene id symbol gene type direction distance location
myom1b myom1,LOC108267511,LOC106590144 coding upstream 370 21496953 ~ 21535633 (+)
chmp5b chmp5,chmp5b,LOC108436133,LOC102227507 coding upstream 55523 21475271 ~ 21480480 (+)
LOC113540433 oprk1,LOC108267332,LOC103039256,LOC108436134,LOC105007147,LOC107664042,LOC107732559,LOC107586336,LOC107558938 coding upstream 70180 21459111 ~ 21465823 (+)
lypla1 lypla1,lypa1 coding upstream 111925 21420585 ~ 21424078 (+)
zgc:56231 LOC108267807,LOC108436107 coding upstream 198864 21330291 ~ 21337139 (+)
enosf1 enosf1 coding downstream 189379 21741189 ~ 21748713 (+)
LOC113540212 colec12 coding downstream 215242 21767052 ~ 21776821 (+)
LOC113539992 tmem236 coding downstream 235380 21787190 ~ 21793201 (+)
mrc1a mrc1 coding downstream 255914 21807724 ~ 21828839 (+)
LOC113540130 slc39a12 coding downstream 277214 21829024 ~ 21843884 (+)
G68523 NA non-coding upstream 48515 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 219488 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 301745 21234025 ~ 21234258 (+)
G68304 NA non-coding upstream 326679 21205745 ~ 21209324 (+)
G68299 NA non-coding upstream 346869 21188531 ~ 21189134 (+)
G68621 NA non-coding downstream 181136 21732946 ~ 21749319 (+)
G68687 NA non-coding downstream 362996 21914806 ~ 21917776 (+)
G68947 NA non-coding downstream 692778 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 831284 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 841029 22392839 ~ 22397101 (+)
plag1 plag1,LOC107570635 other upstream 212036 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 502250 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1381226 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 1468783 19990684 ~ 20067220 (+)
G66864 NA other upstream 2677351 18856456 ~ 18858652 (+)
mettl4 mettl4 other downstream 77266 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 200606 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 1098000 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1766694 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 2476296 24028106 ~ 24106223 (+)

Expression


Co-expression Network