LOC117597114


Basic Information

Item Value
gene id LOC117597114
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22363682 ~ 22364458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303842.1
ATGACCAAGTTTGGAAAGGGCAGCATGGAGCTGCAGAAACTGctggagaaagacagaatgcTGGAAAAAATGCAAGAGAAAAATGAAGAGATGGCCAAAAAGATAAGAGAGCTTGAGAAGGACAGAGACGGATTTGAAGATCTCAGCTGGATGGAGACAGAGCAGGAGAATAGTCTCCAGAGAAAGAAGGCTGGGCTGGAGAATGAGAGGAAGAAATGTGCTGatctagagagagaaaaacaagagatGGAGGCCTCCTGGAGAGAACAGTCCAACCTGTGGCCGCAGAAGCTAAAAGAGAAAGACAACAAGCTGGAAAAAATGCGAGCAGAAAAAGAAGAGATTGCCAAGAAGATGCAAGAACTTGAGAAAGAAGAAGAGCGACAAGAAGATCTCAAACAGATGGAGCTGAATAATCTGCTAGGAGAAATACGAAGAGATACAAGAGAAATTAAGAAAgagcaggaggagaaagaaagtgCTCAGCTGGCACTCACTGAGCTTTTAATGCCAAAGACTGGGAATCTGCAACAAGCCCAGGTTCAGataaaagaggagaaagagcaaTACAAGCTGATGGTAGGAGAGGTGGAAAAGAGGAACGCTGCGCTTATGCGAAACATCATTGTGCTCCAGGCTTCCATCCAATATTTTGAAGAACAAGTAGAGATAGCAGAGAGGGTGAGACACATCTGGAAGAAAGAGAACGATAGcttggaaaaagagagagaggacttgcaaaaaaagaaaaagagtttgaagaaagagagagagagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303842.1 True 777 mRNA 0.44 1 22363682 22364458

Neighbor

gene id symbol gene type direction distance location
ncf2 ncf2 coding upstream 25306 22329268 ~ 22338376 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding upstream 46391 22272475 ~ 22317291 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding upstream 95290 22259992 ~ 22268392 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding upstream 124058 22190686 ~ 22239624 (+)
nfx1 nfx1,LOC108268165 coding upstream 178997 22170332 ~ 22184685 (+)
kif9 kif9 coding downstream 3272 22367730 ~ 22382067 (+)
LOC113539999 LOC108267232,LOC108440662 coding downstream 119827 22484285 ~ 22495110 (+)
atpsckmt fam173b coding downstream 133100 22497558 ~ 22501861 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding downstream 140346 22504804 ~ 22525766 (+)
ankrd33bb LOC108268146 coding downstream 174360 22538818 ~ 22544587 (+)
G68947 NA non-coding upstream 118857 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 445906 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 614363 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 876194 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 1047167 21316255 ~ 21316515 (+)
G68955 NA non-coding downstream 18636 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 28381 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 162870 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 562352 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 637540 23001998 ~ 23004102 (+)
LOC113540377 NA other upstream 601381 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 723525 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1039715 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1329929 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2208905 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 285352 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 954046 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1663648 24028106 ~ 24106223 (+)
G69971 NA other downstream 1744337 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2494568 24859026 ~ 24871263 (+)

Expression


Co-expression Network