LOC113539999 (LOC108267232,LOC108440662)


Basic Information

Item Value
gene id LOC113539999
gene name LOC108267232,LOC108440662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22484285 ~ 22495110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303843.1
ATGGTTCAGAGAACTCTGCTGCTGGGTTCGAAGAAGACTACAGTTAAAAACAACTCAGGGGTGACGCCAGAGGGTCTGTGTGGTGCCTGGGTTAAAGAACCTGATGGAGGTTCCTTCACTTCTCCTAATTATCCTGAGAAATATCCTCCGGATAGAGAATGCATATACATAATAGAAGCATCTCCGAGACAATGCATCGACTTGTACTTTGATGAACAATACGCCATAGAGCCATCTTGGGAGTGCAAGTTTGACCACATTGAAGTTCGAGACGGCCCATTCAGCTCTTCACCCATTATCGGTCGATACTGCGGGCAGCAGAGCCCGATGTATGTGAGGTCCAGTGGGAGATACCTTTGGATTAAATTTGTTGCAGACAGTGAACTCGAGGCCATTGGGTTTTCTGCAAGATACAATTTCACTCAAGATCCTGAGTTTAAAGATGTTGGAACTCCTCTGTCACTGCCATtgtgtgagtttgagATGAGTGGGCCTGAGGGCATCATCGAGTCTGCTATGGTGGAAAAGGAGAGCAAGATTCTGCAAACGGAGGCTGTGGACTGCAAGTGGTTCATTCAAGCACCACCTGGTTCAAAGATCTACCTGCGCTTCCTGGAGTACGAGATGCAGAACTCGAACGAGTGCAAGCGCAACTTCGTGGCGGTGTACGACGGCAGCAGCTCAGTCGAGCACCTGAAGAATAAGTTCTGCAGCACGGTGGCCAATGATGTCATGCTGCTCACGTCGGTCGGCGTCATCCGCATGTGGGCTGATGAGGGCAGCCGCAAAAGTCGCTTCCGTATCCTCTTCACCACCTTCCGAGAACCTCCATGTGAAGAAGATACTTTCTTCTGCCACAGCAACATGTGCATTAACCACACTCTAGTGTGCAATGGTATCCAGAACTGTGTCTATCCTTGGGATGAGAATGGCTGCAAAGAGAAAAGGAAAACCACCATCTTGGACAGCCTGGACCACACCAACATGACCATAATCGGAGTGACCTGCAGTGTGGTGTTTGTTCTTCTCACAGTGTCAATCATCATCCAGGTCAAGCAACCACGCAGGAAGTACCTTGTGAGAACGGATGAATTTGACCCTGCGCTGTTGCCTGAGCCCCTCGAGCCACCACATTATGAGCTGTGCGCTCTGAGGAGCATGGCGTCTGCTGAGGACTTCCCTGGGCTGCGTCGCTCctcctccaagtgtgttcacGGGCACCATTGTGGCTCTCAGGCGTCCAGCGGCAGCCGCACTGACCTGAGCCTGGGTGTCCTCGCTGAAACGGCCAGCAACCCAGGCAGGAGCATCGTGGTGATGAAGCACAGCCACTCGCTTGAGGACACTGAGGTATGTGAGCTAGATGATGAGCTGGAGGATGAGAACATGGAGGAGCAGCCGTGGAGGAGTGTCAATGGACATGAGCATTCAGTCCATGTGCAATGATTTCTGACTGAGATTAACAGATTGTGCATGGAAGATTGACGCCATGGCAGAATGGAGATCTTTTTACCAAGTCTGTTAAAAATATTCGAGCTTCCCTACAACTAATATTGAAATTTTGTTAATGTCTTtataaacatgaagaaaaactaGA

Function

NR:

description
PREDICTED: neuropilin and tolloid-like protein 1, partial

GO: NA

KEGG:

id description
K24360 NETO; neuropilin and tolloid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303843.1 True 1597 mRNA 0.50 9 22484285 22495110

Neighbor

gene id symbol gene type direction distance location
kif9 kif9 coding upstream 102218 22367730 ~ 22382067 (+)
LOC117597114 NA coding upstream 119827 22363682 ~ 22364458 (+)
ncf2 ncf2 coding upstream 145909 22329268 ~ 22338376 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding upstream 166994 22272475 ~ 22317291 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding upstream 215893 22259992 ~ 22268392 (+)
atpsckmt fam173b coding downstream 2448 22497558 ~ 22501861 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding downstream 9694 22504804 ~ 22525766 (+)
ankrd33bb LOC108268146 coding downstream 43708 22538818 ~ 22544587 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding downstream 146632 22641742 ~ 22646438 (+)
tcea1 tcea1 coding downstream 175379 22670489 ~ 22677200 (+)
G68954 scrib non-coding upstream 87184 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 96540 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 239460 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 566509 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 734966 21732946 ~ 21749319 (+)
G68999 NA non-coding downstream 32218 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 431700 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 506888 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 789444 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 796300 23291410 ~ 23291998 (+)
LOC113540377 NA other upstream 721984 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 844128 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1160318 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1450532 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2329508 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 154700 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 823394 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1532996 24028106 ~ 24106223 (+)
G69971 NA other downstream 1613685 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2363916 24859026 ~ 24871263 (+)

Expression


Co-expression Network