LOC117597119


Basic Information

Item Value
gene id LOC117597119
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26835025 ~ 26835888 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303851.1
ATGCCACACTTTGATTCAGGCTGCTGGTATCTCCTGGACATCCCCGTGGACGCAGACGGGCCTTCCGTTTACCTCGACTGGGATAGTGGGGAGGCTGGGAGGGGTGTCTTTGTGAAGAACAAATCTGGCAGGGTTTGTCCACTGATCGAGGGGGTCCAGAGCTGTCGGCATGGATTTGGCCCAGTTCCAGAGGCAGAACGGTGTTGGCTGGGTCCCCCCCAGGAGAATAATGGTCATTGTCACTGGTCATACTTAGTAGCGGAGGTCGGGGAAATTCTTGGCTTTTGCCCCTGCCATCTCCAGAGTTGCCACTGCTCGCTCCATCATTTCCACCATCTTTCGAGGGTTCCGGGCTCCTCTCATGCCCAAGGCTTTCCTTTCTTCGGGCGGCAGGGCTCTCAGAAATCAGTCCATGGCCACCATCTCGACAACCTCAGCTGCAGAGAGTGCCTCCGGCTGCAGCCACCTCCTGGTGTTGCGCAGGAGCATGTCCATCTGGCCACGAGGGGTGGCTTTAGGGTTGTAAGTCCAGTGGTGGAATTCGGCTGCCGCGCTGGTAGAAGAGAGGCCGGAGTGCAGGAGGATCTCCTTTTTCATGAGTTCATACTAGGCAGCCTTGTCGGAGGAAAGCATGTGGTAAGCCAGCCAGGCCTCCCTCATGCAAGGGCGGAGGCCCAGTCCTCCTTGGGCCAATTTTCCCGCAGGGCCACTCGCTCGAATGTAATCTGGTAGGCTTCGACATCATCTTCGTGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303851.1 True 756 mRNA 0.58 3 26835025 26835888

Neighbor

gene id symbol gene type direction distance location
LOC113540659 LOC108267452 coding downstream 24775 26808656 ~ 26810250 (-)
map1sb LOC108267453 coding downstream 29658 26792023 ~ 26805367 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding downstream 44111 26787087 ~ 26790914 (-)
copa copa coding downstream 48507 26770582 ~ 26786518 (-)
slitrk3b LOC108267197 coding downstream 122721 26708082 ~ 26712304 (-)
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding upstream 45580 26881468 ~ 26889336 (-)
skila LOC108267442 coding upstream 68020 26903908 ~ 26913580 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding upstream 81271 26917159 ~ 26933519 (-)
LOC113540546 NA coding upstream 145301 26981189 ~ 26982209 (-)
tmem125b LOC108267439 coding upstream 269606 27105494 ~ 27108411 (-)
G71707 NA non-coding downstream 137928 26696893 ~ 26697097 (-)
G71705 NA non-coding downstream 138704 26694946 ~ 26696321 (-)
G71704 NA non-coding downstream 144631 26689070 ~ 26690394 (-)
G71700 NA non-coding downstream 163180 26671641 ~ 26671845 (-)
G71699 NA non-coding downstream 163489 26671260 ~ 26671536 (-)
G71734 NA non-coding upstream 11458 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding upstream 17379 26853267 ~ 26856672 (-)
G71764 NA non-coding upstream 58793 26894681 ~ 26895564 (-)
G71765 NA non-coding upstream 99102 26934990 ~ 26935197 (-)
G71815 NA non-coding upstream 195429 27031317 ~ 27036462 (-)
G71596 NA other downstream 283995 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 458617 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2248977 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2530099 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3303009 23531238 ~ 23532016 (-)
G71832 NA other upstream 260714 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 367895 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 559469 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 560263 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 579379 27415267 ~ 27432678 (-)

Expression


Co-expression Network