LOC113540064


Basic Information

Item Value
gene id LOC113540064
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31538539 ~ 31544634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303857.1
ACTGCTGTGAAGCTGAATCAGAACATCACTCTCAGTCACTTCTCTGGATCTCGCGTGTGTTTTCAGGGCTGTATATTCCTGTGTGTCGTTGGCTTACCCGGGGATAAGAGACAGGAGAAGACTCCTCACGCGCTGCAGGCTGCCTACCGGATCCACGAGACATGTCTCCAAGAAATCGACAGCCTTTCGAGTATCTCTGTAGGCGTAACTACAGGAAGAGTCTTGTACAGTCTGGAGCAGATGCCTTTGAGAAAAGAATACACGGTGTACGGAGAGAAAGTGAACCTGGCTGCAAAGTTGACCATGGACTACCCGGGGATTGTGTCATGTGATATGGCGACCAAACTTTACTCCAAGCTGCCTCTTTCACGCCTAATGCCTCACGGGACCATCAGTCAGTATGAGGAAGTGCATTATTATGACGAGATTAATCAGATGCTCGATGATGAAGCTGCAGTGTCATCCACGGAGATGGACGGCAGGCGATTGGCTCTAGCTCACATGCAGACGATGCACCTAGACGAGCGGATGGTGGTGAAGTATGCCTCTGCTATTGGCCACACCTTCACCATGGAGATGCTGCGGAACATCCTGCCTCATATGAGTGAACAGGATCTCATGACGCCCCTTAGATCACTGTTTAGAGTGGGCATCTTCAAGTGTGCCTCCAAACCTGAGAACGTCTCCTCAACCAAGATCTGTGAGTGTGAGAAGAGCCACGAAGagTACACGCAGGCCTCTACGGATCCTGTGTGGACGTGTCGGCTGATGAGTTTCTGCAACAAGGATGAAATGGAGATGGTGCATGAGCTGATACAAAGGAATAAGTACCTTTTCCGCGCGATCCACGTGAAATGTGCCAACTACCTGGAGAAAAAATCCTACCGCTGCAGCAAGTGCGACGCCAAGAGGTTCATATTCAAACACAAAGCAGCCACAGGCGACAACAACGAGCATCTCCAGGAGATCTACAAGACAATTCGGCCTTATGAGATCTTTCAGAGACAAGAGAACTTCCTGGCCAAGGTGAACTCAATAGTGATGGAAGCGCGTGACAGGACGACTGCAGGCAGCTGCGAGTGTGCTCAGCTAGTGGAGACAGTACTCATCCCTAGATTGAGACACTGGAGGTGTGCAGGAGACGTGCCCAAGACCTTCTACTACCTGGTGGAGAGTGCAGCTGCCTGTGTATATCTTCAGAACGAtgccaggGCGTTGGAGTATTTGACTGAGGCCAGGTCCATTCTGGAAAATCTAAAAGAAGGAAAGCCTGCATTTCCATCAGCAGATCCTGAAGACGTTCAAATCTGCCAATTCCAGCAAGCGTTCATGCACCGGCTCACAGGAGAGATTCTGTTTAAAGCAGGGCAAATTCTGGAGGCAGAGGAGAATTTTAAGAAAGCCTTGGAGCTCCTGAACTGCAAACTCCCTCGCAGTTCTGTTGCACAATCCTTGAAGCTCATATACGAGAAGATGAAGAAACTCCTCTACCAACTTGCCTGTCTGCAGGAATGCATCGATTGTCTGTCTTTCCTGTGGCAAATCGGCTGCATGCGTGGGCAGCTCAGGAGTGCATCGCTGGCCATCACCATGGAGATCAACCTGGCCATCCGGAGCGCTGATCCGTTCAAGATGCTCTACGCCGCCATCGACTATCTGAAGTACAGTCAGCTTACGGGCGAGGAGAGCGAGTGCCGGCGTCTTGAAGCCTTCCTGTGCAGGACGTGTGCCAGCCTGTCAGACTACCCTGAGGGCCGGAGGCTGATCAGCCACTTGACTCGAACCCTTGCCGTCGTTAAACTGTGCACAGGGGACCTGGAGCAGTCCATCGAGTGCACTATGCGAGCTCAGCAGCTGAGTGAAGTGCTGAACGGACCCGGTTTGGACGTATACAGGGAGAGCGTGCAGCAGATCCTGACTTTGGAGAATCTGAGCAAAGAAATGTCGAGCAGCGTAGCTAAGGGCTGGTTTTATGCTGCCTGCATGAACTTCTTGCTCTATGCTGGATTTTCATTCAGACCATTTGAGGAGTGTTTGGCTTTTGTGGAAGAGTCTCGGTCAGACGCAAACCTGGAAGCTGATAAGAGTCTGATGCTGCATCTGTACGCTGCAGTGGCTCTGTGgtatgCGCGGCTGGCGAATTGGGAGAAGTTTGCAGTCTTCTTTGATAAGGCGTATGAAGTGTACGCTCAGAGTCCCACCTCCATCGAGTCCATCAGTGGTGCGGTCATGCTCCTGGAGTGCAGCGTCCTCCTCTTCAGGAAAGATCTGACTGAAAGCAACCGTCAAAGAAGGATTAAAAGGACACGAAAGCTCTTTTCAGACTTCACACAACGATTTGGAAAAAATCACATCCTCGCCCCGCGTGTGCTGCACCTGAACGCTTACTTTCACCAGCTGACCGGAAGCAGAACGCTGGTGCAGGACCTCCTCAAGGAAGCTCTGCTGCTGTGTGAGAAACAGGGGAACCTTCTAGACCAGAAGTGGATCAGGCAGAGCCAGGCTGACTGGTCTGGTGCGTGCAGCCACACTCCACCTGAGTGGTCTACAGCTGTTCTGAGCATGCCCAGTTGGGACGAAGCAGCAATACTCCAGCCTGAAGAGCTGCTTAAGTGTTGTTTCTACTTGAAAAAAGTGGAGGATACACGGCCTTCCCGTACATTAGGAAAAATGCGCAGGTTATTTTTAACACCTAGAATAGAGGGTGCATGTGGCCACGTGCCGAGACCTTTGACACAACGTTATGCGGTTAGCGTACTATAAAATGCCATTAGTAATGGCTGACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303857.1 True 2787 mRNA 0.51 17 31538539 31544634

Neighbor

gene id symbol gene type direction distance location
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 5281 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 36161 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 174268 31360647 ~ 31364271 (-)
LOC113540523 LOC108267123 coding downstream 181567 31353902 ~ 31356972 (-)
carmil3 carmil3,LOC108268291 coding downstream 193555 31290821 ~ 31344984 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding upstream 165430 31710064 ~ 31727552 (-)
LOC117597140 NA coding upstream 1278924 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 1290405 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 1299467 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1428151 32972785 ~ 32977700 (-)
G74256 NA non-coding downstream 227630 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 311951 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 422103 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 507159 31030389 ~ 31031380 (-)
LOC113540224 NA non-coding downstream 700429 30836352 ~ 30838110 (-)
G74417 NA non-coding upstream 22417 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 191658 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 199717 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 208487 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 322448 31867082 ~ 31870008 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 261290 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 762720 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 787571 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1516014 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1807682 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 325884 31870518 ~ 31871874 (-)
G74547 NA other upstream 329675 31874309 ~ 31874827 (-)
G74550 NA other upstream 335400 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 338309 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 360992 31905626 ~ 31910974 (-)

Expression


Co-expression Network