lamc2 (LOC108267337)


Basic Information

Item Value
gene id lamc2
gene name LOC108267337
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31690175 ~ 31706269 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303858.1
ACGAGCTTCCAGACAGTTTAAAAAGCTCGCGCACTGAGAGGTGAGGACGCAAACAAGTCTCGCGGGACCGTGCAGAGGTTTTTTactacaccatacacacacacacaccgggacacacacacacacacacacgggacacacacacaccgggacacacacacacaccgggacacacacacacactcggagtGTCTGGAACATGAGGAGCGCGTGGATCTTTCTGTGCGCAGTCTGCGTCTTTTGCCCGGTTAAAGGAACTCATCGCTCCTCGAGCTGTGCGTGTAATGGAAAGGCTCTGTACTGCGTGCGAGACTCCTTGGGTCTGCGCTGTGCCAACTGCCAAGACAACACTGAAGGCCGGCACTGTGAGAGCTGTAAGGAAGGATACTACCACCAGAGAGCAGGAGAGCGCTGCCTGCCCTGCTACTGCAACCCTGTAGgCTCTGAGGGCCCAGGATGTGACAGtcaggggcagtgtgtgtgtaagcgagGTGTGCAGGGGGCCCAGTGTGACCGCTGCGCTAACGGATCTCCAGTCTCAGCTACCGGGTGTGAGCCGCTGCAGCAGAAACCCTGTTTCTGTAACGGTCATTCCAACGAGTGCTCCCCAGCTCAAGGTTACTCAGTTTACAACATCATCTCAACATTTGATCAAGGGATGGAGGGCTGGAGAGTCGTCACTGCTCCGAGCGCGAGTCCATCCCAGGTGCAATCCCGCTGGTCTCCAGCACACCACAGCGTCGAGGTCATCTCTTCAGACATCCTGCCTGTTTACCTGTCTGCTCCAGCTCAGTATCTGGGAAATCAGGCTCTGAGCTACGGTCAGACACTGTCCTTCACACTCCGTCTGAACCGAGGAGTCCGCTATCCCTCTGCCTCAGATGTCGTATTAGAAGGAGCTGGACTAAAGGTTTCTGCTCCGCTGGGAAATATGAGGACCGTCATCCCCTGTGGCAAGAAAATCACCTACACGTTCAGgcTGGATGAACAACCCAGCAGCAGATGGAATCCCCGGCTCTCAGCACCAGAATTTCAAACCCTTCTGAGTAACGTCACAGCCATCAAGATCCGAGTCACGTTTGGGGAAGAGGGTCGTGGTTATCTGGACGACGTCACTCTGGTCTCAGCTCGGATGGGTTCTGGCTTCCCTGCACCCTGGGTGGAGAAGTGCCATTGTCCGACAGGTTATGAAGGACAGTTCTGTGAGCGCTGCGCTGCAGGCTATAAAAGACGTTTCCCTGGACAGGGTGTCCGTAGCCAGTGTGAGCCGTGTGCCTGTCGGGGAGGAAGCTGTGATCCTGAAACAGGGGACTGCTACTCAGCTGATGAGACTCCTAGTGGACAAGCCTGTGGTACTGGTTACTACAGCGACCCTGAGATCCCTGGAGCCTGCAAGAAGTGCCCATGCCCCGCAGGCTACATCTGCTCGCTCGCTGCAGGGACCCTGAATGTAAAGTGCAAATGCCCACCTGCGACTACAGGCTCTCGGTGCCAGAAGTGCAGCGATGGTTTCTATGGTGATCCTCTGGGAGAGAGTGGCGTTCAGCGACCCTGCCAGCGCTGCCACTGTAACGGCCACTTGGACTTAAATGCCGTGGGCAACTGCGACCGCTTGACGGGGGAGTGTTTCAAATGCATGAACAACACCACAGGCTTCcagtgtgagaagtgtgtggaGGGATTCTTCCACAGCAAAGCCGGCGATGCGTGTCGAGCTTGTAACTGCAACCCAAAGGGATCCATCGCCAGCTCCTGCAGCGACCAGGGCCAGTGCAAGTGTAAAGAGGgttttgaggggaaaaagtgTGTCAGATCCACGTGTCCATCATGCTTCAACCCTGTTAAGAGCCAGATTGGGAAGTATGTGAAGAAGCTGCAGCAGGTGGAGGCTCTTTTTAATGAAGTGGGGACTGGTGGTGTGGACATCACTCGCGCCATAGACAAGGCAATCAGCACTGCTGAGGACATGGTCAAGACAGTGGAAAGTGACGCAGACTCGCTGATTGAGGCAGAGAAGAATCTTCACGCCCAGCTGCTAGCCATCGGCAGCAATCAGATGAAAGAGGAGGGGAAAATAGAGGACATCTCGGAGATGGTAGAGAGCGTTGTCAGCCAGGAGCGGCAGTATCAGAGAGAAGTAACTGACATCCAGAAGCTCATCAGTGATATTAGGCAAAATCTGCAAAAGGCCAAGCGGGAAATCCAATCAGTTGAGCTCCCCTTGGGTGATGCCCCGCCAGGTACAAACACGGTGTCCGATTTGGTTCAGAAAGCAAGCGATCTCGCTGAGAAGCATGTGGGTGAGGCAGCAACAGTGGAGCAGACAGCGAAGAGCTCTCTGCTCGAGGCTGAGAAAGCTTTGGCTCTCATGCGCACTGTCATCAGCGGAGAAAACAAAGTCACAGAGCAGCTCAATGGCCTCAGGACTCAGTACGAGACAGACATAGCCCAGGTGAATGCCATGAACAAGCAGGCGGCTCGTCTGAGTAACGCAGCAGAGACTGAAAGCACAGTGGCCCTCGATACTCTGAAACAAATATCTGACCTGGAGAAAAACCTTCCAAAGGCCCCAAAGAAGGACATCACCAGCTTGGTTGCCACACTGGATGGTCTGAAGAATGCATTTGGGAGTAACGTGTCAGGATTCCTGCAGCTGCATAATCAGGCTGGTGCTGATCAGAGAGAGGCAGTGGAGCTAATGAATCAGCTCAAAAATGCTCAGCAGGTCCAGGATCACCTGCTCGCCAGGGCCAACGTTGCCAAAGCAGACGCAGATAAAGCCCTGAAGCTCTTTAACAGTCTGGGCAGTGTGGATGAGGCTCTGGAGACACTTAAAGGATTTGAAACCCAGATCAACAGTAGTAAGGCTTTGGCTGATGATGCGCTTAGTAAACTGCCCATAATCAGCAGCATCATCGGGAAAGCCGTGGTCAACAATGACAAGACTCAGGCCATTCTGGACCAGCTGGGTGACTACAGTGATGCTCAGGCCACACTCAACAAGCTGAACATCTCTCTGGCCAAAGTAGAGCAAGTGCTGATTATTCACAACACAATGGCCAGTTTTGACGTTTGTTCTAGAAAgaaAAAATGTCCGGTTCCCCCGCCGTCAGATCTTTTGAAAGCAGCTACGACGCTGCAGGGAGGTCTGGAAGGGCTAGATACCCAAGTACAATCCACCAGGAATAAACTGACTGAAGAGAAaacagatgcagagagagagcggAAGCTAGCCGAGGAGGTTAATTGGGAGGCCAGTGGAGCATACATTAAAGCACAGAACACTAGAGATGCTGTTGGAGATGCTTTGAAGTCCGTTAATAATCTTCTAGGATTACTGGGAACACCGGGAGCTGTAGATGAGAAGAAGGTGACGGATCTGGAGGAGGCTATAGCTACAAGCCGTAGACGTGTGGAGACAGAGCTCAGGCCCAGACTCAGAGAGCTAGAGGACAAAGAGGCTCAGCAGAGAGCTGCCATCACACGCATGATCAACGATATCGACACCATCCTGGCTGATATCGACAACCTGGAGCACATTAACCGAGCCATTCCAGGTGGCTGCTATAACACACCGCCCATCGAGAGGGCTTAGTGGCATAATGCAAGAAACAGACTGTGGGTCTGTGCATAAAAACACGCCTCAGAGACTTTTAGAAAATTGACACCACTTTAgatttaatgtgtgtattttatactGGAGGTTTGTGAGTCTGTTACTAactatatttatgtttgtttgagAGAAAAAGATGACTGTGATGTGTAAGACACATGCAATAGTAATGCAGGTATGAAAGATTCGgatagttttttgtttgtttgaaccCACGTATAATGCAGCGATTAAAGCGAGCGTGTCTGTAAA

Function

NR:

description
laminin subunit gamma-2-like isoform X1

GO: NA

KEGG:

id description
K06246 LAMC2; laminin, gamma 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303858.1 True 3868 mRNA 0.52 23 31690175 31706269

Neighbor

gene id symbol gene type direction distance location
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 5708 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 79978 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 95488 31587261 ~ 31594687 (+)
zp3f.2 NA coding upstream 103420 31584100 ~ 31586755 (+)
ap1g2 LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629 coding upstream 108635 31566281 ~ 31581540 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding downstream 26343 31732612 ~ 31753667 (+)
LOC113540131 NA coding downstream 375650 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 610719 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 629819 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 632042 32338311 ~ 32338811 (+)
LOC117597165 NA non-coding upstream 143380 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 156952 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 158979 31524103 ~ 31531196 (+)
G74315 NA non-coding upstream 162105 31527856 ~ 31528070 (+)
G74199 NA non-coding upstream 334054 31355554 ~ 31356121 (+)
G74370 NA non-coding downstream 959 31707228 ~ 31707436 (+)
G74384 NA non-coding downstream 28387 31734656 ~ 31743095 (+)
LOC113540254 NA non-coding downstream 71852 31778121 ~ 31847866 (+)
LOC117597031 NA non-coding downstream 153691 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 239779 31946048 ~ 31946542 (+)
c4h22orf39 c7h22orf39 other upstream 337031 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 592246 31061730 ~ 31097929 (+)
G73944 NA other upstream 923043 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1211882 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 2009000 29673514 ~ 29681175 (+)
LOC113540067 NA other downstream 53620 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 252753 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 254600 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 260930 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 264665 31970934 ~ 31972279 (+)

Expression


Co-expression Network