LOC117597128


Basic Information

Item Value
gene id LOC117597128
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32316988 ~ 32319907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303860.1
atgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcatgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACAGTGCTGCTGTACAGAATCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtGGAGGTCTGAGTTCCAACCTTcccccaagaatgtctgctaaacTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAACAAACCTCCAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303860.1 True 747 mRNA 0.45 4 32316988 32319907

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 211697 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 563321 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 610719 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 632521 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 706791 31596514 ~ 31610197 (+)
LOC117596959 NA coding downstream 16181 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 18404 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 20588 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 36089 32355996 ~ 32356585 (+)
LOC117597129 NA coding downstream 42734 32362641 ~ 32364748 (+)
G74578 NA non-coding upstream 20454 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 109164 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 370446 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 453831 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 469122 31778121 ~ 31847866 (+)
LOC117596964 NA non-coding downstream 212939 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 223018 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 240356 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 387186 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 418196 32738103 ~ 32740111 (+)
LOC117596937 NA other upstream 21422 32294241 ~ 32295566 (+)
G74577 NA other upstream 21623 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 36212 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 42465 32274035 ~ 32274523 (+)
LOC117597127 NA other upstream 44854 32269344 ~ 32272134 (+)
LOC117596941 NA other downstream 266164 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 274929 32594836 ~ 32596942 (+)
G74651 NA other downstream 368410 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 369519 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 373696 32693603 ~ 32694103 (+)

Expression


Co-expression Network