LOC117597140



Basic Information


Item Value
gene id LOC117597140
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32823558 ~ 32825567 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034303863.1
GGTAAGCGTACCCAGGTGttagaaacagaaacacaatgaACAACAACAAGCATCAGAAACTGTATTATcagcattttaattcattactttCATTAATGGATTGTTACACCACATATGTAATATCAGATGAAATGAGGTTTGAGTTTACAATATTATAAGTGGAAGTAGTGATGAAAGAATTTACATGACTAGGTGTAATTataagtgggtggagctagatGTGTAAGATACAGTTTAGACAGTTTCACAGAGACAACACTGCCATTCATATCTACTGCAAGAGAGACACTCACAACAACCATGTTactcttcctctctgttttcATAGCTCTTACTGATGTTGcagaggCTGTAGATGAGCTCATTACACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGATGAGGATTTTTATATCTACAGGTGATGTCACTAAAGCTGAACAACCTGACCCAAGACTATCCATCAGACTCCATAAAAATGAGAGGAAAGTAGTTTTGGAGCTCTCCTCTGCTTCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaactacACAGTACAAAAACTCCTTCACATCACGAAAgggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTtgattcaaataaatattagtTTTCAAATTAAAATCCCTTTGATGAGGACggcttcccttttgagtctggttcccctcaatgtttcttcctcagaTCGTCTCAGGGAGTCTTTCCTCACCACAGTTGCTCTGTGTCCCAATGTCATAGTAGATCCTGATAACGTGTCCAGTGaactttctgatctttctggaatgtaa

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034303863.1 True 942 mRNA 0.41 3 32823558 32825567

Neighbor


gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 1096006 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1278924 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 1290300 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 1321180 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 1459287 31360647 ~ 31364271 (-)
LOC117596924 NA coding upstream 9472 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 18534 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 147218 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 170789 32996356 ~ 32996892 (-)
LOC117597007 NA coding upstream 207451 33033018 ~ 33033661 (-)
LOC113540133 NA non-coding downstream 7277 32815429 ~ 32816281 (-)
LOC117597139 NA non-coding downstream 11823 32810432 ~ 32811735 (-)
LOC117596923 NA non-coding downstream 13262 32809596 ~ 32810296 (-)
LOC117596938 NA non-coding downstream 19336 32803554 ~ 32804222 (-)
LOC117596927 NA non-coding downstream 45760 32776966 ~ 32777798 (-)
LOC117596967 NA non-coding upstream 24360 32849927 ~ 32851375 (-)
G74702 NA non-coding upstream 36640 32862207 ~ 32862659 (-)
LOC117596966 NA non-coding upstream 46179 32871746 ~ 32873023 (-)
G74717 NA non-coding upstream 199854 33025421 ~ 33025846 (-)
G74720 NA non-coding upstream 205475 33031042 ~ 33031426 (-)
LOC117596929 NA other downstream 158138 32661892 ~ 32665420 (-)
G74644 NA other downstream 179024 32644024 ~ 32644534 (-)
LOC117596950 NA other downstream 189847 32633213 ~ 32633711 (-)
LOC117596946 NA other downstream 619653 32203394 ~ 32203905 (-)
LOC117597125 NA other downstream 645434 32175807 ~ 32178124 (-)
G74703 NA other upstream 40379 32865946 ~ 32868466 (-)
LOC117597171 NA other upstream 120567 32946134 ~ 32947158 (-)
LOC117597170 NA other upstream 124267 32949834 ~ 32950494 (-)
LOC117597177 NA other upstream 145437 32971004 ~ 32971513 (-)
LOC117597009 NA other upstream 209336 33034903 ~ 33042101 (-)

Expression



Co-expression Network