LOC113540271 (LOC108267333,LOC108436197,LOC103041383,LOC107752978,LOC107691867,LOC106577738)


Basic Information

Item Value
gene id LOC113540271
gene name LOC108267333,LOC108436197,LOC103041383,LOC107752978,LOC107691867,LOC106577738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18943964 ~ 18947765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303866.1
AGGCAATGTAATTATCCAGATCTTGTGATCCTGACTCCAGACATGAAAGAAGGCCTTTATGTGAATAAAGAAGacattcagcacacacacactcaggcattGTCTCAATACACAACCTACTGAGGAACCCAGCTTACATCGGGTGTCATGCCTGGTCTGGTCATCTTTAATATGTGACCTGATACTGTGGGCTGAGCGTAtggaggtgtgtgagagtggtgtAATGGAGCCAGGGGCCCCAGGGAGCTCCACCATAGAGCCAGGGCTGAAGAGGCTCTCCTTTGCGTACCAGAGCCTCCTGGAGATTCCTTATGATGCCATTCTCAAACAGCGGGACACCCTAGAGGTCCTGGACCTCAGTTATAACCTGCTGGATGAGAGCCCAGCTCTTCTGGGGGAGCTGGACAAGCTGAGCACTCTCATCCTGGATGGCAACAACTATAGCACTCATGTCAAATTCCCCTACATGCCAAGTCTGACCACACTGTGGATCAACAAGAACAAAATAAGCAACCTTCCCATCATAGTTGAGGAGATACGCTGCAAGTTCCCCAATATCAAGATACTTAGTATGATGAACAATGAGGCAGCGCCCAGTTACTTTAATGGAGGCAGTCTGACTCAGTACATTGATTACAGGCAGTATGTTATCAGTCAGCTCCCCAGTCTGGAGGTGCTGGATGACACAGAGGtgcaggagaaagagagagcacagGCCAGGAAGACTTACAGGATGaggaagagcagagatggcagTAAAAGGAGGAAGGAGCTCCATCACTGATGCTTGCTTCATCCATC
>XM_034303867.1
CAGGCAATGTAATTATCCAGATCTTGTGATCCTGACTCCAGACATGAAAGAAGGCCTTTATGTGAATAAAGAAGacattcagcacacacacactcaggcattGTCTCAATACACAACCTACTGAGGAACCCAGCTTACATCGGGTGTCATGCCTGGTCTGGTCATCTTTAATATGTGACCTGATACTGTGGGCTGAGCGTAtggaggtgtgtgagagtggtgtAATGGAGCCAGGGGCCCCAGGGAGCTCCACCATAGAGCCAGGGCTGAAGAGGCTCTCCTTTGCGTACCAGAGCCTCCTGGAGATTCCTTATGATGCCATTCTCAAACAGCGGGACACCCTAGAGGTCCTGGACCTCAGTTATAACCTGCTGGATGACCCAGCTCTTCTGGGGGAGCTGGACAAGCTGAGCACTCTCATCCTGGATGGCAACAACTATAGCACTCATGTCAAATTCCCCTACATGCCAAGTCTGACCACACTGTGGATCAACAAGAACAAAATAAGCAACCTTCCCATCATAGTTGAGGAGATACGCTGCAAGTTCCCCAATATCAAGATACTTAGTATGATGAACAATGAGGCAGCGCCCAGTTACTTTAATGGAGGCAGTCTGACTCAGTACATTGATTACAGGCAGTATGTTATCAGTCAGCTCCCCAGTCTGGAGGTGCTGGATGACACAGAGGtgcaggagaaagagagagcacagGCCAGGAAGACTTACAGGATGaggaagagcagagatggcagTAAAAGGAGGAAGGAGCTCCATCACTGATGCTTGCTTCATCCATC
>XM_034303868.1
AGGCAATGTAATTATCCAGATCTTGTGATCCTGACTCCAGACATGAAAGAAGGCCTTTATGTGAATAAAGAAGacattcagcacacacacactcaggcattGTCTCAATACACAACCTACTGAGGAACCCAGCTTACATCGGGTGTCATGCCTGGTCTGGTCATCTTTAATATGTGACCTGATACTGTGGGCTGAGCGTAtggaggtgtgtgagagtggtgtAATGGAGCCAGGGGCCCCAGGGAGCTCCACCATAGAGCCAGGGCTGAAGAGGCTCTCCTTTGCGTACCAGAGCCTCCTGGAGATTCCTTATGATGCCATTCTCAAACAGCGGGACACCCTAGAGGTCCTGGACCTCAGTTATAACCTGCTGGATGACACTCATGTCAAATTCCCCTACATGCCAAGTCTGACCACACTGTGGATCAACAAGAACAAAATAAGCAACCTTCCCATCATAGTTGAGGAGATACGCTGCAAGTTCCCCAATATCAAGATACTTAGTATGATGAACAATGAGGCAGCGCCCAGTTACTTTAATGGAGGCAGTCTGACTCAGTACATTGATTACAGGCAGTATGTTATCAGTCAGCTCCCCAGTCTGGAGGTGCTGGATGACACAGAGGtgcaggagaaagagagagcacagGCCAGGAAGACTTACAGGATGaggaagagcagagatggcagTAAAAGGAGGAAGGAGCTCCATCACTGATGCTTGCTTCATCCATC

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog

GO: NA

KEGG:

id description
K24399 LRMDA; leucine-rich melanocyte differentiation-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303866.1 True 801 mRNA 0.49 5 18943964 18947764
XM_034303867.1 False 799 mRNA 0.49 5 18943964 18947765
XM_034303868.1 False 735 mRNA 0.49 5 18943964 18947764

Neighbor

gene id symbol gene type direction distance location
aco1 aco1,LOC107601170,LOC107559949,LOC107675411 coding downstream 780 18926146 ~ 18943184 (-)
sepsecs sepsecs,LOC107559948,LOC107601169,LOC107675416 coding downstream 18441 18910752 ~ 18925523 (-)
lgi2a lgi2,lgi2a,LOC107675415,LOC107691834,LOC107728668,LOC107601159,LOC107559946 coding downstream 36593 18899283 ~ 18907371 (-)
LOC113540167 LOC108268090 coding downstream 47716 18886574 ~ 18896248 (-)
ccdc149a ccdc149,LOC108268063,LOC100691566,LOC107671163,LOC101478871,LOC102778358 coding downstream 61017 18866514 ~ 18882947 (-)
acer2 acer2,LOC107601172,LOC107691831,LOC107675399,LOC107559953 coding upstream 6947 18954712 ~ 18963749 (-)
dennd4c dennd4c coding upstream 16689 18964454 ~ 19014305 (-)
haus6 haus6 coding upstream 67591 19015356 ~ 19023907 (-)
LOC113540749 NA coding upstream 69058 19016823 ~ 19016953 (-)
LOC113540750 NA coding upstream 69505 19017270 ~ 19017400 (-)
LOC113539972 NA non-coding downstream 429246 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 556974 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 923155 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1079081 17864010 ~ 17864883 (-)
G66350 NA non-coding downstream 1134950 17801666 ~ 17809014 (-)
G67454 NA non-coding upstream 380583 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 385309 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 657727 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 668683 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 821592 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1104049 17792226 ~ 17839915 (-)
G66281 NA other downstream 1309096 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1499776 17439477 ~ 17444188 (-)
G66053 NA other downstream 1541500 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2338247 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 102385 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 932203 19879968 ~ 19881640 (-)
G67587 NA other upstream 940414 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 971715 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1014817 19962582 ~ 19965851 (-)

Expression


Co-expression Network