dsg2l


Basic Information

Item Value
gene id dsg2l
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7095820 ~ 7118074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303902.1
cacactcccacacacacacacacacacaacactcagaGTAACACACATCCTGTTGCTTTCGTGGAGTTACATGGCGCCGTTTCTGACCTTCTGCGTTTTAATAACTGCGTTTTGCACTACTGTAATCTGGGTTGAAGCTGATAAAGGAGAGCTGCGAACGCTCCATCGACAGAAAAGAGAATGGATCATCCCTCCGAAGGAGCTGTACGAGAATACCGAGGAATATATCAGAGAAGAATTTATTGCAAAAATCCGATCAGATGAAGAGACCAGGACGGATATTGAATATTCTCTAATAGGACCTGCAGCGGTCGAGGGATTATTCAGTGTAGGCACAAAGAATGGCTACGTCAGGATTCATGGTACCTTGGACAGAGAGAAAACCGCTAGTTATGAACTCAAAGGGAGAGCTACGCTAAAAGATGGATCACTTGCTGAAAGGGACCTCGATTTGAAAATCATAGTTCTAGACCTGAATGACTGCATCCCTGTGTTTAAGGTTGAGGTGATTGGTTCTGTCGACGAGCTCAGTGATGAAGGCGCCCACGTAATCGTAATCACAGCCGTTGATGGGGATAAGGAAGGCACGCCACATTCACAAATTGCTTACAAAATCATACAGCAGGAGCCAGCTGGACAGGAGATGTTCAAAATCGAGCAATCATCTGGTGAAATCAAAGTCAGAATTAACACTCTGGACCGAGAGACACAAGAACAATACAGACTGATTATCACAGGTACAGACATGAACGGAGGCATGACAATGACAGAAACTAGAAACAAACCACTGACAGGAACAGGGACTGTGAGCATCAACATTCGTGATGTTAATGACAACATCCCCGTATTAGAGAAGAGCTATTATGAGGGCAGTGTAGAGGAGAACACCATTTATGTGGAAGCAATCCGGATTAAGGCCATAGACAAGGATAAGATCCACACAGAAAATTGGGAGGCTGTGTTCACCATCATCACAGGAAATGAAGCGGGTTACTTCAACATCACCACGGACTCTAAAACTAATGAGGGCATCCTGATGGTCACTAAGgaGCTGGACTATGAGATGTTGAAAGAGGTCAATCTGATAGTGACAGTCAGGAACAAGGCAACTTATCACAAGTCAGTGGTGATTGACAAGGCCACAACATATCCCATTAAGATCAAAGTGGTGAACGTGCCCGAAGCCCCTCGTTTCCTCCCCAGTGTCAAAGTTATCTCCATCTCTGAAGACCACAAAACTATTGACCTGAGGAAGGTCATCACCATCTACACAGCCACGGACAGTGATACACTGTTAACCGCCACTAACGTCAGGTATGTAAAAGGAGATGATATTGACAACTGGGTGAGCATTAATGAGCACACAGCCGAGATCAGACTCAACAGATATCCAGACCGCGAGTCCAAGTTCCTGAAAAATGGAACATACTACGTTAAAATCTTATGCATCACCAATGAATTTTCACCCAAAACTGCGACAGGAACTCTTGCAATTCAGGTGCAGGATTTCAATGACCACTGTCCGATTCTGACCAGCTCAGTCCAAACGCTGTGTTACGGCAGCAGCGTAGTGTACGCCACAGCCAAGGATGAGGATAAATACCCCAATGCAGAACCTTTTGAATTCAGAGTGGTTACCAAGGTCACAAAAGAGAACTGGAGAGTCGAGCGTCTCAATGAAACAACAGTCATTTTGCGCAACCAGGAGATCCTGTGGCCGGGACACTACACAGTGGGATTGGACGTGCAAGACCAGCAGGGAAAGTCCTGCGAGGTTCAAAATCTTCAGGTAACTGTGTGCACATGCAATGAGCAGCAAGTGTGCCGACCTGACAGACGGATCAGCAATGGCAACGGACTGGGAGGAGGTGGAGTTCTGGCACTACTGCTAGGAATCCTGCTTCTCTTGTTGATTCCAGTGCTTTTGCtgttgtgtgagtgtggagGAGCTGCAGCTGTTGGTCAATTCCGGGCCTTTCCCTTCGAACAAAAACAGCAACTCATCACCTATCACACTGAAGGTCAAGGAGAGGATAAGGGACTAGCACTACTGTCTCAGGTGCCCGTGAATGTAGATGGTGGAAGCAACGGGAAATTCAAACCTGGATTGGGAACACGTGAAGAGTGGAGGAAATATGGATGGGAATCTCGAGAAGATTACATAAATCACCGGTGGAAAGATTATATTGATAAACAGGAAACTGTAATTGGAGGACATCCTGAACTTTATACAACGAGCACCCTTGATTACATGGCTCTATCTGAGTCCTACTTAGGCAACTACTATGCAAAGAAAACGCTGGATATGGTGAAGCAGGAAGCTAGTACAAACCAGCTGATGTTTTCTAACTATGAAGTCTGCAACTCAGTCACAGGCTCCTTAGAGGACATCTGCAGCCATCTACATGAGGAAAACAATCTGGATTTCCTCGATGACCTCGGGCCTCAGTTCAAAAGGCTCGCCGAAATTTGCTGTGGCTCGACCATCGAATTCGAGGTCAGCTCCACTACCATGCCTCCCAAAACGGTCTCATCCATTTCACAAGAGGGTGTCAAAATGGAAGATGCTGTTGGTGGTGTCCACAGTGAGGCAACCTCCATCTCTGCATCcagctcctcctccaccacccaAATCACAACTGCAAATTATGGAGAGAGTATTATCAGTGGAGGCGCCACATCAGCTGCCACTGTAGGCCAAACTCTTCTAGTCCAGCAGCCAGCTCTCTACCTTTCCTCTACACCCATGTACGTAGTGGAGCAACAGCATCACCCCACCCTTCTTCTGGCTTCTGGTCCAATGCTGGGTGTTCAGGAAAGCAACGTGGTGCTGGTGGAGAAAGGGGGTACCAACGTTGCAATTGCTGCCCAGAACACCCTTCCCAGGCTAGGGTTGCAGCAAGCAAACACCAGAGTACTGGTGGATCCAGGTATTGGAGGCACAGTGGTGCGTGGGTTCACAGGCCAACCTGAGACTCAGGGCACCGTTTCTGGTACCTATCGGGTCGTAGAGAGCCGACGAGTTGAGAGCACAGAGCCTGTACATGTCGTGCAGAGCTCCTCACACTCCAGCACCAGCAAAAATCTGAGTATGCAGGCCAAAGAGCAAAGTGGAGGGATCATGGCTTTAGGAAACGCATCAGATATCCCAAGTGCCATTTCATTGTTGCAGCAAGACATGCCTCAATTTGATGTGCCAAATGGTGGCACTCACAAAGAGGTGCGAGAGGAAAGGGTTTCTGTTGTCGAGAAAATTTTCCAGTCGAGCTCCAGCTCCTAATGCAActacagacacactcacacattctaCAGCTATGACACACATGCCACAAACTGAATTCCCAGAAGAGCAAGTTGGAGAACAACTAACAAAGAGAAAGGTGAAGACTTTTTGAAGATCCATTAATGTAATTCATAGTGATTGCCATGAGTAGTTGACTAATCAAATACTGTTATTCAGCCTCAATTAGTAAaatattactaattactaaGTCATATTTGAATGGGATTAGTGTTTCTGAATACAGAGAACCTGATTGGACTGTTTGCAATTATATATTTGGCAATATCTAGTGTTAGATGTTCAAATCAACTgctctttcatttattactggaaaaataaaattttcatcACATAA
>XM_034303903.1
AAAGGGAGAGCTACGCTAAAAGATGGATCACTTGCTGAAAGGGACCTCGATTTGAAAATCATAGTTCTAGACCTGAATGACTGCATCCCTGTGTTTAAGGTTGAGGTGATTGGTTCTGTCGACGAGCTCAGTGATGAAGCGCCCACGTAATCGTAATCACAGCCGTTGATGGGGATAAGGAAGGCACGCCACATTCACAAATTGCTTACAAAATCATACAGCAGGAGCCAGCTGGACAGGAGATGTTCAAAATCGAGCAATCATCTGGTGAAATCAAAGTCAGAATTAACACTCTGGACCGAGAGACACAAGAACAATACAGACTGATTATCACAGGTACAGACATGAACGGAGGCATGACAATGACAGAAACTAGAAACAAACCACTGACAGGAACAGGGACTGTGAGCATCAACATTCGTGATGTTAATGACAACATCCCCGTATTAGAGAAGAGCTATTATGAGGGCAGTGTAGAGGAGAACACCATTTATGTGGAAGCAATCCGGATTAAGGCCATAGACAAGGATAAGATCCACACAGAAAATTGGGAGGCTGTGTTCACCATCATCACAGGAAATGAAGCGGGTTACTTCAACATCACCACGGACTCTAAAACTAATGAGGGCATCCTGATGGTCACTAAGgaGCTGGACTATGAGATGTTGAAAGAGGTCAATCTGATAGTGACAGTCAGGAACAAGGCAACTTATCACAAGTCAGTGGTGATTGACAAGGCCACAACATATCCCATTAAGATCAAAGTGGTGAACGTGCCCGAAGCCCCTCGTTTCCTCCCCAGTGTCAAAGTTATCTCCATCTCTGAAGACCACAAAACTATTGACCTGAGGAAGGTCATCACCATCTACACAGCCACGGACAGTGATACACTGTTAACCGCCACTAACGTCAGGTATGTAAAAGGAGATGATATTGACAACTGGGTGAGCATTAATGAGCACACAGCCGAGATCAGACTCAACAGATATCCAGACCGCGAGTCCAAGTTCCTGAAAAATGGAACATACTACGTTAAAATCTTATGCATCACCAATGAATTTTCACCCAAAACTGCGACAGGAACTCTTGCAATTCAGGTGCAGGATTTCAATGACCACTGTCCGATTCTGACCAGCTCAGTCCAAACGCTGTGTTACGGCAGCAGCGTAGTGTACGCCACAGCCAAGGATGAGGATAAATACCCCAATGCAGAACCTTTTGAATTCAGAGTGGTTACCAAGGTCACAAAAGAGAACTGGAGAGTCGAGCGTCTCAATGAAACAACAGTCATTTTGCGCAACCAGGAGATCCTGTGGCCGGGACACTACACAGTGGGATTGGACGTGCAAGACCAGCAGGGAAAGTCCTGCGAGGTTCAAAATCTTCAGGTAACTGTGTGCACATGCAATGAGCAGCAAGTGTGCCGACCTGACAGACGGATCAGCAATGGCAACGGACTGGGAGGAGGTGGAGTTCTGGCACTACTGCTAGGAATCCTGCTTCTCTTGTTGATTCCAGTGCTTTTGCtgttgtgtgagtgtggagGAGCTGCAGCTGTTGGTCAATTCCGGGCCTTTCCCTTCGAACAAAAACAGCAACTCATCACCTATCACACTGAAGGTCAAGGAGAGGATAAGGGACTAGCACTACTGTCTCAGGTGCCCGTGAATGTAGATGGTGGAAGCAACGGGAAATTCAAACCTGGATTGGGAACACGTGAAGAGTGGAGGAAATATGGATGGGAATCTCGAGAAGATTACATAAATCACCGGTGGAAAGATTATATTGATAAACAGGAAACTGTAATTGGAGGACATCCTGAACTTTATACAACGAGCACCCTTGATTACATGGCTCTATCTGAGTCCTACTTAGGCAACTACTATGCAAAGAAAACGCTGGATATGGTGAAGCAGGAAGCTAGTACAAACCAGCTGATGTTTTCTAACTATGAAGTCTGCAACTCAGTCACAGGCTCCTTAGAGGACATCTGCAGCCATCTACATGAGGAAAACAATCTGGATTTCCTCGATGACCTCGGGCCTCAGTTCAAAAGGCTCGCCGAAATTTGCTGTGGCTCGACCATCGAATTCGAGGTCAGCTCCACTACCATGCCTCCCAAAACGGTCTCATCCATTTCACAAGAGGGTGTCAAAATGGAAGATGCTGTTGGTGGTGTCCACAGTGAGGCAACCTCCATCTCTGCATCcagctcctcctccaccacccaAATCACAACTGCAAATTATGGAGAGAGTATTATCAGTGGAGGCGCCACATCAGCTGCCACTGTAGGCCAAACTCTTCTAGTCCAGCAGCCAGCTCTCTACCTTTCCTCTACACCCATGTACGTAGTGGAGCAACAGCATCACCCCACCCTTCTTCTGGCTTCTGGTCCAATGCTGGGTGTTCAGGAAAGCAACGTGGTGCTGGTGGAGAAAGGGGGTACCAACGTTGCAATTGCTGCCCAGAACACCCTTCCCAGGCTAGGGTTGCAGCAAGCAAACACCAGAGTACTGGTGGATCCAGGTATTGGAGGCACAGTGGTGCGTGGGTTCACAGGCCAACCTGAGACTCAGGGCACCGTTTCTGGTACCTATCGGGTCGTAGAGAGCCGACGAGTTGAGAGCACAGAGCCTGTACATGTCGTGCAGAGCTCCTCACACTCCAGCACCAGCAAAAATCTGAGTATGCAGGCCAAAGAGCAAAGTGGAGGGATCATGGCTTTAGGAAACGCATCAGATATCCCAAGTGCCATTTCATTGTTGCAGCAAGACATGCCTCAATTTGATGTGCCAAATGGTGGCACTCACAAAGAGGTGCGAGAGGAAAGGGTTTCTGTTGTCGAGAAAATTTTCCAGTCGAGCTCCAGCTCCTAATGCAActacagacacactcacacattctaCAGCTATGACACACATGCCACAAACTGAATTCCCAGAAGAGCAAGTTGGAGAACAACTAACAAAGAGAAAGGTGAAGACTTTTTGAAGATCCATTAATGTAATTCATAGTGATTGCCATGAGTAGTTGACTAATCAAATACTGTTATTCAGCCTCAATTAGTAAaatattactaattactaaGTCATATTTGAATGGGATTAGTGTTTCTGAATACAGAGAACCTGATTGGACTGTTTGCAATTATATATTTGGCAATATCTAGTGTTAGATGTTCAAATCAACTgctctttcatttattactggaaaaataaaattttcatcACATAA

Function

NR:

description
PREDICTED: desmoglein-2-like

GO: NA

KEGG:

id description
K07597 DSG2; desmoglein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303902.1 True 3638 mRNA 0.46 14 7095820 7118074
XM_034303903.1 False 3237 mRNA 0.46 11 7095820 7108967

Neighbor

gene id symbol gene type direction distance location
LOC113526634 NA coding downstream 13820 7049124 ~ 7082000 (-)
prkacbb LOC108411205,LOC108267323,LOC103034112,LOC103396312,LOC102779523,LOC105935432 coding downstream 53031 7021733 ~ 7042789 (-)
exosc4 exosc4 coding downstream 77543 7015028 ~ 7018277 (-)
LOC113526956 NA coding downstream 100360 6989280 ~ 6995460 (-)
LOC113526837 NA coding downstream 136741 6956772 ~ 6959079 (-)
LOC113526521 LOC108267321,LOC108436859 coding upstream 578826 7696900 ~ 7727146 (-)
si:ch211-241e1.3 lama3 coding upstream 693581 7811655 ~ 7918897 (-)
rpe65a rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 947128 8065202 ~ 8078853 (-)
efcab14 efcab14 coding upstream 988819 8106893 ~ 8118886 (-)
LOC113526472 NA coding upstream 1329309 8447383 ~ 8450998 (-)
G60669 NA non-coding downstream 214485 6878644 ~ 6881335 (-)
G60672 NA non-coding downstream 302868 6785327 ~ 6792952 (-)
G60503 NA non-coding downstream 453635 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 493594 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 652005 6443744 ~ 6443815 (-)
G60727 NA non-coding upstream 112580 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 124051 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 323188 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 365047 7483121 ~ 7483703 (-)
G60830 NA non-coding upstream 377328 7495402 ~ 7500703 (-)
LOC117597002 LOC107721237 other downstream 196593 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 1136275 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1601781 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 2009463 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 2150799 4928360 ~ 4945021 (-)
LOC113526822 LOC108268278 other upstream 1334536 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1453422 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1521394 8639468 ~ 9528825 (-)
G61478 NA other upstream 1865160 8983234 ~ 8984453 (-)
LOC113540087 LOC108267275 other upstream 2196775 9314849 ~ 9327431 (-)

Expression


Co-expression Network