ap1g2 (LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629)


Basic Information

Item Value
gene id ap1g2
gene name LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31566281 ~ 31581540 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303928.1
cacacacacagacacacacacacacacacacacagccggatGGAGGTGGCGCAGGCGCTGTGTACAGAGTAACAGTAAGTTGTTCCGACTGGGTTCCTCAGACAGTAAATAACAGGGTTGTTTGAATGAACCTGCTGATGATATTAATGACACTGGAACACTGTGTACGCTGCTGAGAGGGAACAGTGCTGGATACCACCGAGCCACTCACTGAGACATGGCTCCGTCAGTACGCTTACAGGAAATGATCCGGGCGATCCGAAGTGCCCGGACTCAGGCGGAGGAGCGGGCGGTTATCCAGAGAGAGTGTGCTGCCATCCGAGCACAGTTTCGTCAAACTGACACCGAAGGCCGCTTTCACAATCTCGCCAAGCTGTTATATGTGCACATGCTGGGCTATCCTGCACATTTTGGGCAGatGGAGTGTGTACACATGATAGCCAGCTCTCGGTACAGCGAGAAACGGATCGGTTACCTGGGGGCCATGATGCTCCTGGATGAGAAGCAGGATGCCAGCCTGCTTATCACCAACTCCATCAAGAATGACCTTTCGCACGGTAGTCAGCATGTGCAGTCTCTGGCCCTGTGCACTCTGGCCTGTATGGGTTCTGCGGAGATGTGTCGAGACCTGGCCCCTGAAATCGAGCAGCTCCTCAGGTCCTCCAGCTCCTACATCAGGAAGAAGGCAGCTTTGTGTGCCGTCCACATTGTAAGGAAAATTCCTGACATGGGAGAGATGTTCACACCTGTTGCAGGCTCCCTGCTCTCGGAGAGGAACCATGGAGTTCTACACAGTGCCATAGTTCTGATCACGGAGCTGTGTGATCGCAACCCTGACACTCTGGAGCAGTTCCGCAAGTCTGTTCCACAGCTGGTTCAAATAATGAAGGATCTGGTGACGTCAGGTTATTCTCCAGAACACAACATAGCTGGCATCAGTGACCCTTTCTTGCAGatTCGTATTCTCAGATTGCTCAGGATTTTAGGTCGCAATAATGATGCAGCGAGTGATCTTATGAATGATCTCCTAGCACAgGTGGCCACTAACACCGACAGCAGTAAGACTGCAGGCAGCGCCGTGCTGTATGAAACAGTGCTCACTGTCATGGACATCAAATCAGAAAGTGGTCTCCGGGTTCTTGCTGTGAATATTTTGGGACGGTTTCTTTTAAACAATGATAGGAATATCCGCTATATATCCATGACATCACTCCAGAAGATTGTCCAGACAGATCACAATGCAGTGCAGAGACACAGGGGTACTATTGTGGACTGCCTGAAGGACCAGGATGCCTCAGTTAAACGTCGTGCGTTAGAGCTTTCCCTAGCTTTAGTAACTGCAGCGAACATCCGCACCATGATGAAAGAGCTTCTCGCCTTCCTCTCCACCTGTCCGCCAGAACTTCGAGCAAGCACGGCGTCTGGCATATTCAACACAGCTGAACGgTATGCACCGTCTCAGCGCTGGCACATCGACACCATCCTGCATGTCCTCATCACGGCAGGGAGTGACGTGCGAGATGAGACCGTGCCCAACCTAGTTCAGCTCATTGCTACAACGTCCAAGCTTCACTGCTACACAGTTCATAAACTTTACAGAGCGCTAATCACTGACATCTCACAGCCATCCCTGGTTCAAGTAGCCTGCTGGTGTATAGGGGAGTATGGTGACTTGCTGCTGAAAGGAGAGTGTGAGGACACAGAACCTATGCAGGTAACAGAGGACGATGTTCTTGATGCCTTGGAAACAGTCTTACAGTCACACATGTCCGCTCCAGCAACCAGGGGTTTTGCCCTAACTGCTATCATGAAGCTGAGCACACGCATCACAGCCAATGTGGACCGAATCAGGAGTATAGTTAGTATCTTCGGCAGCTGCATCGATCTGGAGCTTCAGCAGAGAGCAGTGGAATACAACGCCCTCTTCAAAAAATATGACCACATAAGGGCTGCTGTGTTGGAGAGGATGCCAGTAGTTGATAGGAGCTTGCCTGGTTCCTCCAATGGAGATCTAATCAGAGAGTCTGCTAAAGACTCTAAAGATCAGAGCAAGCCTCTTGCAGGAGTGACAGTCTTGCCTCTGGAACCAGCAAATCAGGTGTGTGACCTTTTGGACTTGCTGGGTGAAACTGATACATCTCTCCAGGAAAATAATGTAAACGTCAACACGACGCCCACCTCTAAGAGTTCAAGTGCAAGCGGAAACCTGCTGGATCTGCTGGGAGGTCTAGAGGCCACTCACGCTCCCACTGTGACAGTGTATGATCGAGGAGGAGTGAGTCTGAAACTTCagtgtgacagacagacagagaccgGCATCACGGTCACTTTCACTGCTTCTAACTCCACGCAGAGTGATGTCACCAACTTTACCCTACAAGCAGCAGTACCTAagAGTGTACAGCTTCAGATGAAGGCTCCAAGTGGTGATGTGATTCCAGCACAAAATGGTGGTACAGTCACGCAGACTGTTTTACTCAACAGTACCAGCAAGGCAAGCCTAAAGATGCGGGTTCGGGTGTCCTACTCCAGTCAGGGCGCAGTCTGTCAGGAAACAGTACAGATTGACTCCTTCCCAAACCCTGCTTGGAACTGACTGTGGCATTTGCCTGGGCGTGATACAGGATCAGACCTTGAAGGGAATTACAGTTTGTTTCTAGTCATGGTTATTGATGTACAAAGAACTCCACTGTATCTCTGGTGAATATCTATGGTACGTTATTATACCTTGGGAATTGCAGTGGAGAATTTGTGCTGATTTTATTCAGACAGCTCtcaaagtgaaaatgtttaGACACAAATTAtggttaaaatatgttttttttttgttttttttttttatcttaaaaaagaaaatgaaatataagcTGTTCATATGAAAAGGAAATCCAAGCCAGTGTTTTGTTTGACCTCTTATAATTGTGGTCAAATTTACTTACAGAAACCACTAGTTGTTGGGTGACAATAATTTTGTCCAGTGAACCTTTTGATTCTTTACTCTGCTATCCAATCAGATAAAAAATGTAAGGGCAAAATAATTTTATCCAGCACAGTCAATACCAGCAGCTGTACCTCTGTATTTGGCTTGGACTCTGTGGAAACCTACAGATTTCAAAACGCGACTCCGTTCGGTGTAACGCGTGCTGTGTGTACACGCAGTTAAACCTGTGTCAGACCTACACCAGTCCCAGCGAGCTAAAGGATGGGTCTCTGGCTGTAGATCTTTTCTTTCTGGTTGCAGTTATCCACAAAAAACCTTCGTACCTCTCAAGTTTGATCTGGAGCATTCAGAGCTgtattcaaatactttttttcgTGAAAATGGTTTCATCTTGGCTGAATCCAGACGCTAACGAGCACTCTTTCATGTCACACTCTCGCCATACCAGTCTAACACGGGCACTACTGATGAGTCGATCTGATACACGTTCAGGTTATTTACACAATATCTGGGATAATGGGTCCTTGTCcattgcattcattcatttttctttttaaaataaaaagctgttttctctttcaa

Function

NR:

description
AP-1 complex subunit gamma-1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12391 AP1G1; AP-1 complex subunit gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303928.1 True 3523 mRNA 0.47 22 31566281 31581540

Neighbor

gene id symbol gene type direction distance location
prmt5 prmt5,LOC107694666,LOC107668985,LOC107558089 coding upstream 5574 31548280 ~ 31560707 (+)
si:ch211-119o8.6 LOC108268351 coding upstream 322202 31239568 ~ 31244079 (+)
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding upstream 329380 31222287 ~ 31236901 (+)
LOC113540056 LOC108267180 coding upstream 345261 31218928 ~ 31221020 (+)
clstn2 clstn2,LOC107668970,LOC107738117 coding upstream 353948 31130107 ~ 31212333 (+)
zp3f.2 NA coding downstream 2560 31584100 ~ 31586755 (+)
LOC113540625 LOC108267346 coding downstream 5721 31587261 ~ 31594687 (+)
dhx9 dhx9 coding downstream 14974 31596514 ~ 31610197 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding downstream 38305 31619845 ~ 31684467 (+)
lamc2 LOC108267337 coding downstream 108635 31690175 ~ 31706269 (+)
LOC117597165 NA non-coding upstream 19486 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 33058 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 35085 31524103 ~ 31531196 (+)
G74315 NA non-coding upstream 38211 31527856 ~ 31528070 (+)
G74199 NA non-coding upstream 210160 31355554 ~ 31356121 (+)
G74370 NA non-coding downstream 125688 31707228 ~ 31707436 (+)
G74384 NA non-coding downstream 153116 31734656 ~ 31743095 (+)
LOC113540254 NA non-coding downstream 196581 31778121 ~ 31847866 (+)
LOC117597031 NA non-coding downstream 278420 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 364508 31946048 ~ 31946542 (+)
c4h22orf39 c7h22orf39 other upstream 213137 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 468352 31061730 ~ 31097929 (+)
G73944 NA other upstream 799149 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1087988 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1885106 29673514 ~ 29681175 (+)
LOC113540067 NA other downstream 178349 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 377482 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 379329 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 385659 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 389394 31970934 ~ 31972279 (+)

Expression


Co-expression Network