dcun1d1 (dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878)


Basic Information

Item Value
gene id dcun1d1
gene name dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29534634 ~ 29540015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303967.1
GGGGGCGGGTGGAGTCGTACTGCGCATGACCGGAAGTAGATGACGGGCGAGAGGGGAAAAGCGGAAGAGGGAGTCTGGAAATCACAAACatgAACAAGCTGAAATCCTCGCAGAAGGATAAAGTTCGCCAGTTCATGATTTTCACGCAGTCGAACGAGAAAACAGCGCTGAATTGTTTGGCTCAGAATGACTGGAAACTAGAGGTGGCCACAGACAACTTCTTCCAGAATCCTGAGCTTTACATACAGAATCTGAAAGGACTGTTCGACAGGAAAAAGCTAGAGCAGCTCTACAATCGGTACAGAGATCCTCACGATGACAATAAGATCGGTATAGACGGCATTCAGCAGTTCTGTGACGATCTCGGTCTCGACCCAGCCAGTATAAGCGTCCTCCTAATAGCGTGGAAGTTTCGCGCCGCGACACAGTGCGAGTTCTCCAAGCAAGAATTCATGGACGGGATGACTGAACAAGgatgtgACAGCATAGAGAAGCTTAAAGCACAGTTGCCAAAAATGGAGCAGGAGTTAAAAGACCAAGGCAAATTTAAAGACTTCTATCAGTTTACTTTCAACTTTGCAAAGAATCCCGGACAGAAAGGCTTGGaTTTAGAAATGGCAATTGCCTACTGGAATTTAGTATTGGCAGGGCGTTTCAAATTCCTCGACCTGTGGAACAAATTTTTAGTGGAGCACCATAAGAGATCCATTCCCAAAGACACCTGGAACCTCTTGTTAGACTTCAGCACCATGATAACCGATGACATGTCCAACTACGACGAGGAAGGAGCGTGGCCAGTCCTTATCGACGATTTCGTCGAGTTCGCTCGGCCGTACATCGGGACAAAAAGCACGGCAGTCTAGGGGACTTCACCGTCCCGACCTCATGCACACCTCCACCTTGTGGAGGACTGAACTGAGATCTACATTGCCTTTTCCGACCCTCAGGATCAAGACGCTCATGTACAGCAAAGACATTTCAGAGACGCGTCTCCTCTTCGTCATCTAGCGGTggtttgggcttttttttttttttcttttctcctccccAATTTTTCAATTTGGATATGTGTGCCACGTCTGTGTCAACTGAATCTGGATCAAGCTCTAggacttcatcatgttttttttttttttttttttcttcttcttcttcttctcccacTCTCCCCACCTTCACCTGGGCAGGAGCAAAATCACAACAGAGACGCCATCTTCATCCCTAGCCAGGGCGTGGGTTGGGGAACCTCAACCTTAAATCTGAATTTTAGCACTCCACATTCGTTCCTGcgttgaatctttttttttttttttttttttc
>XM_034303968.1
TCAAGgttatttgttttgctttgaCGGGGCACACGCCTGGTCGGTGTTGAAACTCTGCTAGGAATCTGATTTCCGTGGTGTGATGGTTTGAGAGtttagacagagacagaaagagagagagagagagctgctggAAACAAGCTGAAATCCTCGCAGAAGGATAAAGTTCGCCAGTTCATGATTTTCACGCAGTCGAACGAGAAAACAGCGCTGAATTGTTTGGCTCAGAATGACTGGAAACTAGAGGTGGCCACAGACAACTTCTTCCAGAATCCTGAGCTTTACATACAGAATCTGAAAGGACTGTTCGACAGGAAAAAGCTAGAGCAGCTCTACAATCGGTACAGAGATCCTCACGATGACAATAAGATCGGTATAGACGGCATTCAGCAGTTCTGTGACGATCTCGGTCTCGACCCAGCCAGTATAAGCGTCCTCCTAATAGCGTGGAAGTTTCGCGCCGCGACACAGTGCGAGTTCTCCAAGCAAGAATTCATGGACGGGATGACTGAACAAGgatgtgACAGCATAGAGAAGCTTAAAGCACAGTTGCCAAAAATGGAGCAGGAGTTAAAAGACCAAGGCAAATTTAAAGACTTCTATCAGTTTACTTTCAACTTTGCAAAGAATCCCGGACAGAAAGGCTTGGaTTTAGAAATGGCAATTGCCTACTGGAATTTAGTATTGGCAGGGCGTTTCAAATTCCTCGACCTGTGGAACAAATTTTTAGTGGAGCACCATAAGAGATCCATTCCCAAAGACACCTGGAACCTCTTGTTAGACTTCAGCACCATGATAACCGATGACATGTCCAACTACGACGAGGAAGGAGCGTGGCCAGTCCTTATCGACGATTTCGTCGAGTTCGCTCGGCCGTACATCGGGACAAAAAGCACGGCAGTCTAGGGGACTTCACCGTCCCGACCTCATGCACACCTCCACCTTG
>XM_034303969.1
TTCAAGgttatttgttttgctttgaCGGGGCACACGCCTGGTCGGTGTTGAAACTCTGCTAGGAATCTGATTTCCGTGGTGTGATGGTTTGAGAGtttagacagagacagaaagagagagagagagagctgctggAGTGAGTGGAGAAGGCGCTAGCTAAGCGGCTATAGGCTGAATCCTAAACGCACATCTAGTGCACTAGGAACAAGCTGAAATCCTCGCAGAAGGATAAAGTTCGCCAGTTCATGATTTTCACGCAGTCGAACGAGAAAACAGCGCTGAATTGTTTGGCTCAGAATGACTGGAAACTAGAGGTGGCCACAGACAACTTCTTCCAGAATCCTGAGCTTTACATACAGAATCTGAAAGGACTGTTCGACAGGAAAAAGCTAGAGCAGCTCTACAATCGGTACAGAGATCCTCACGATGACAATAAGATCGGTATAGACGGCATTCAGCAGTTCTGTGACGATCTCGGTCTCGACCCAGCCAGTATAAGCGTCCTCCTAATAGCGTGGAAGTTTCGCGCCGCGACACAGTGCGAGTTCTCCAAGCAAGAATTCATGGACGGGATGACTGAACAAGgatgtgACAGCATAGAGAAGCTTAAAGCACAGTTGCCAAAAATGGAGCAGGAGTTAAAAGACCAAGGCAAATTTAAAGACTTCTATCAGTTTACTTTCAACTTTGCAAAGAATCCCGGACAGAAAGGCTTGGaTTTAGAAATGGCAATTGCCTACTGGAATTTAGTATTGGCAGGGCGTTTCAAATTCCTCGACCTGTGGAACAAATTTTTAGTGGAGCACCATAAGAGATCCATTCCCAAAGACACCTGGAACCTCTTGTTAGACTTCAGCACCATGATAACCGATGACATGTCCAACTACGACGAGGAAGGAGCGTGGCCAGTCCTTATCGACGATTTCGTCGAGTTCGCTCGGCCGTACATCGGGACAAAAAGCACGGCAGTCTAGGGGACTTCACCGTCCCGACCTCATGCACACCTCCACCTTG

Function

symbol description
dcun1d1 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1).

NR:

description
DCN1-like protein 1

GO: NA

KEGG:

id description
K17822 DCUN1D1_2; DCN1-like protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303967.1 True 1320 mRNA 0.46 7 29534634 29540015
XM_034303968.1 False 946 mRNA 0.47 7 29534755 29539598
XM_034303969.1 False 1014 mRNA 0.47 7 29534754 29539598

Neighbor

gene id symbol gene type direction distance location
b3gnt5b b3gnt5 coding upstream 20855 29500475 ~ 29513779 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding upstream 38049 29481242 ~ 29496585 (+)
LOC113540045 LOC108267996 coding upstream 75339 29455551 ~ 29459295 (+)
ephb3a ephb3a,LOC108267069,LOC108437521,LOC107681809,LOC107599837,LOC107708817,LOC107656865,LOC105889460,LOC107722542 coding upstream 110866 29390033 ~ 29423768 (+)
pls1 pls1,LOC108268020,LOC108437523,LOC107681752,LOC107709028 coding upstream 177845 29339123 ~ 29356789 (+)
ccdc39 ccdc39 coding downstream 1968 29541983 ~ 29553547 (+)
LOC113540073 NA coding downstream 14000 29554015 ~ 29559125 (+)
LOC113540482 LOC108267690 coding downstream 56451 29596466 ~ 29602830 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding downstream 164473 29704488 ~ 29720768 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 212056 29752071 ~ 29760972 (+)
G73089 NA non-coding upstream 7716 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 9798 29524298 ~ 29524836 (+)
G73072 NA non-coding upstream 10392 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding upstream 13612 29519108 ~ 29521022 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding upstream 233501 29299135 ~ 29301133 (+)
G73092 NA non-coding downstream 1080 29541095 ~ 29541435 (+)
G73118 NA non-coding downstream 89578 29629593 ~ 29629823 (+)
G73151 NA non-coding downstream 172455 29712470 ~ 29712682 (+)
G73154 NA non-coding downstream 178447 29718462 ~ 29719317 (+)
G73123 NA non-coding downstream 182051 29722066 ~ 29723750 (+)
fubp1 fubp1 other upstream 338485 29181767 ~ 29196149 (+)
G72873 NA other upstream 622530 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 737475 28792847 ~ 28797159 (+)
gng5 NA other upstream 773183 28758545 ~ 28761451 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 1196461 28316404 ~ 28338173 (+)
asip2b NA other downstream 79978 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 133499 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 914742 30454757 ~ 30478293 (+)
G73944 NA other downstream 1206116 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1521715 31061730 ~ 31097929 (+)

Expression


Co-expression Network