eif4a2 (eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495)


Basic Information

Item Value
gene id eif4a2
gene name eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29519091 ~ 29530681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303979.1
CCCAAGGTGCACGCGGGCTCCGGAATGAAATAGTTCCGGTTAAATAAAACTCGCCTGAGATTCACGCGCTCTTCCTTTCCGAGTGGATGCCGAAGTCGCGAGCGGATCATGTCTAGCGGTTCTGCTGATTATCACAGCTCTAGAGATCGAGATCATGGAGGGCCAGAAGGAATGGAGCCTGATGGCGTCATCGAGAGCAACTGGAATGAGATCACGGACAACTTTGATGACATGAACCTGAAGGAGACGCTCCTTCGAGGAATCTATGCGTATGGTTTTGAGAAGCCGTCAGCTATTCAGCAGCGAGCGATTATTCCTtgcattaaagGATACGATGTCATTGCTCAAGCCCAGTCAGGCACGGGCAAAACAGCCACGTTTGCCATCTCCATCCTGCAGCAGTTGGAGATTGAGCAGAAAGAGACCCAGGCGCTGGTCCTGGCGCCGACCCGTGAGCTTGCTCAGCAGATTCAGAAGGTCATCTTGGCCTTGGGCGACTACATGGGTGCGTCGTGCCACGCCTGTATCGGAGGCACCAACGTGCGCAACGAGATGCAGAAGCTTCAAGCGGAAGCGCCGCACATCGTCGTGGGGACTCCGGGGCGCGTGTTCGACATGCTGAACAGGAGGTTTCTCTCTCCTAAATGGATCAAGATGTTTGTCCTGGATGAAGCAGATGAAATGCTGAGTCGTGGTTTCAAGGATCAGATCTATGAAATCTTCCAGAAATTGAGCACAAACATTCAGGTGGTGCTCCTTTCGGCCACCATGCCCGCTGAGGTCTTGGACGTGACCACGAAGTTCATGCGTGAGCCGGTGCGCATCCTGGTGAAGAAAGAGGAGCTCACCCTGGAGGGTATCAAGCAGTTCTACATCAATGTAGAAAGAGAGGAATGGAAATTGGACACGCTCTGCGATCTGTACGAGACTCTGACGATTACCCAGGCCGTCATTTTCCTGAATACGAGGAGAAAGGTGGACTGGCTGACCGAGAAAATGCACGCGAGAGACTTCACCGTGTCTGCTCTGCATGGAGACATGGATCAGAAGGAGCGTGATATCATTATGAGAGAGTTTAGGTCTGGATCGAGCCGAGTGCTGATTACTACAGATCTGTTGGCTCGTGGTATCGATGTGCAACAAGTTTCCCTTGTTATCAACTACGACCTTCCGACGAACCGAGAGAACTACATCCATAGAATTGGCCGTGGAGGTCGTTTTGGCAGAAAAGGCGTCGCCATTAACTTCGTTACTGAAGAGGACAAACGGATCCTTCGAGACATTGAGACGTTTTACAACACGACCGTGGAGGAGATGCCGATGAACGTGGCCGATCTGATTTAAACCGCcggagatttatttttaatgcaggGATAGCTACAGAATAATCACTTGCATTTTTTGCGCTTATTTTAttggaagaataaaaaaagcctGTTTCTCCTCAATGCTGGCTGTGGATCAGACGTGCGAATTCGATACGATACGTGACGTGACTTTCCTGCGCGGACGGCTGTGGGCGTCGTATCGGTGTCTCCCGGTAGCGGCGTTTGCAGAAAAATGGGTTCTTTAAATGTGTTCTTTATCAGGTATTTTCTCCCTAGTATGTTCAAAATATCCGTGTTAGATGTTCTTCATCGTTTAGTAATTTACTTGTGGACTAAAAGATACAAGTGCTGCATCAAGTCTGCCAATTATGTTATGCTAACATACGTGTGCAGTTTAACTTGGTTCACTCACTCCTTCCCTGTCAGTAAACGcaaaggcacttttttttttttttggattgtaTTAATTTAATTGTATATTGTTTTATCAAGTACTTCTTTGTGTGAAGTCCTCTTCAAAAGTGGGTCTTAACATTTAAAGGATTTAAATGTTTCATGTAGTGTTTGGCTCATTTGACAATAAAGAGGATGGTGATACTCTC

Function

symbol description
eif4a2 Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2).

NR:

description
PREDICTED: eukaryotic initiation factor 4A-II isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303979.1 True 1930 mRNA 0.48 11 29519091 29530681

Neighbor

gene id symbol gene type direction distance location
kcnmb2 NA coding downstream 53071 29461041 ~ 29466020 (-)
mfsd8l2 LOC108267997,LOC108437504 coding downstream 66298 29442115 ~ 29452793 (-)
pcolce2a LOC108268019 coding downstream 147565 29359500 ~ 29371526 (-)
chst2a LOC108268021 coding downstream 182388 29333119 ~ 29336703 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding downstream 196174 29300306 ~ 29322917 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 46017 29576698 ~ 29592827 (-)
LOC113539879 LOC108267234 coding upstream 99289 29629970 ~ 29666855 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding upstream 150563 29681244 ~ 29692555 (-)
si:ch211-13f8.1 LOC108267891 coding upstream 162697 29693378 ~ 29705682 (-)
cdc14aa LOC108267888,LOC108411489 coding upstream 201584 29732265 ~ 29748113 (-)
G73327 NA non-coding downstream 198757 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 300933 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 304040 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 322924 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 9414 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 76920 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 140506 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 180405 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 182212 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 347170 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 634126 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 727262 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 866666 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1282286 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 33540 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 193907 29724588 ~ 29730857 (-)
G73619 blvra other upstream 488825 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1210846 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1242768 30773449 ~ 30775819 (-)

Expression


Co-expression Network