LOC113540626 (rec8)


Basic Information

Item Value
gene id LOC113540626
gene name rec8
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28745630 ~ 28756644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303988.1
TCAACTTTCACTGAAAGTTTATTCGTATTAGGAGCGACACAGGGAgagtttttaatcattattttattaaactaatATTAAACTAAATTCAGTTAAAAGAATGTTTTATTATCCTAATGTACTTAATCACAGAACTGGATGCTTCGCTACAATATGGCTGGCAGCCACGAAGGCCAGAAAGATGAACCGGCGAGATCTGCTCAAGGTTAACATTCAGAGCACAtgcactgACATTATGAACTACGTGTTGGTACGAGTGCCTCCTCTGGCTGCAGGTCTGCCTCGGCCTCGCTTCTCCCTCTACCTGTCCTCCCAGCTGCAGTACGGAATCGTGCTCGTCTTCCACCGCCAGTGCCAGCTGCtgctagAGGAGGTCCAGGAGGCCATTGACAGACTGCACCGTTACCGTATACAGGTGCAGATCGACATGCTGCCTGAGGAGatcagACAAACGCAAACACTTCCTGATGCTCTCACTCTTCTGACTGAGTCGGAGGGGGCGAGAGATCCATTCTTCGGATCAATGGAGTTTGGTATGCCCAGTCCAAGTAGCCTCATACAGCTGGCTCAGGAAATGGGCGTGGTTTTTCTGGAGAGACCACTGTCTCCACCTTTAGAAGGCATCACAGCGAGTCAGGAGTCGATCACGATGCCCGAACGGGAACCTGTTATCATGCTTGAGCCCGAGTTTGAAGGGGCGGAGCTGCAGGAGATTGACATGATTGAAATGCTGCTGGAGCAATCGGATCAGTTCCCCGAGGgtgaggaggagagagaacgTGAGGCAGAACAggcaagggagagagagagaagagaaagagagagagaaagagaaagagaagagcttgtagagagagagcgagaacgAGCAGCAGCAGAAATAGAGAGGACGAGGGATCTGACGGTGTCTACCCTCCTCATGGAGCCGGCTCAACCCACTGAAGTACCAAGCCGAGACATTGTGTCTGTGCCCGAGGAGGTGGAGCTGCCCGCTGCGATGCCTGAgccagctgagagagagaggacccCGGAGCCCGTCCCTATTCCACCGTCCCCGCCTAGCCCAGAGAGGAGGGAGCGGCGGAGAGAGAGTCCCCGCCTGGAGGAgCTCATCCCAATCCCAGAGGTTCCTGTGGAGGGAccaaggaggaggaagaggcagCTAGTCTTTATGGATGAAGACATACAGATATCCCAGGAAGCACTACAAGCCCAGATTAATGTTCCAAGCATTGAAACCAAATCTTTAGCGGATGTTCTGATCAGAGCACCTTCTCAAGTGAGCGATCCTAAAGTACTCCTCAGTAACTCCTGCATGAAACTTCCTGCTGATATTCTGGAGTTGTGGAAGCAGGGCGCAGTCATCCCTCACATCCCTCCATCCAAACCCCGCAAGGAGCCTGAAGAGGAGGATCTGGAGGCCGtacgagagagggagagaggaagagaggagcaagaagagggagagatcagagagATTCCCACAGAGATAGTGGAGTCAGGCATCTCACGATATGATACTCCAGTTTCTTCTCTGGTGTTGGAGGTAACAGACAGAGAAATCTCGCCCTTGGAGACTCCTGAGACTCGACGGTCTCCTGTTCCCGTGTCTGTGTGCGGTTTGGAGGACATTCCCGAGGAGAGAGTCCCTGAACTGGAGGATGTCGTGATGGATGTTGATCCTCTCAgGCGAATGGCTGCTATTGGTGAGGATGAAGCGACGTTTCACTCCCTACTGCCCCCTAGAGTCAAGCGCAGAACCATCGCTCAGGCTTTCTGGAGGCTGCTGGAGCGGATCGACACGAAAGAGGTCACGGTGCGACAGGACGAGCCGTACGGTGACATCATCATCTCGGTGATAAAGCAGCCCCGTGTGATTGAGACTCTGGCGTGattgctttttcattttcattctttttttttttttttaatgagttgaAACAGTTTGTTAAAGTTCATGAAGAATTGtattcacattttaaacactATGAAGTTGAATTATCGACTTTTTATATAACGGAACACGTTTTACATAATGAAATGTCGTTAACcctgaatggatttatttatttatttattgaaatcgAGTTCTGCTTAATGATTGAGTCtcatcactttaaaaaaatttttattgaaTGTTGGTTGCTAAATTTTTGAAATGTTATCATaatttgaatgatttattaTGAGATTTGTATACCGTGTTTTATTCTGGTTTTTAACATTTCATGAAGTTATTTCACAGTTTAATATGAGTCATGTGCTGTGACGCGCTCGTGTTTTTTAGGTTTAGTTTTATTATGATGTACTGATGCCTCATTCAGTGTTAGCTTGGCATTGCTACGATTACATTTGTATAAAATACAATTAGTAACCTTGTCACATGGTCTGGTTTTGTCAAGGAATGTGAAGTAAAGATTGCCGTGTAAAACTACACACTCACAACATTTCAACATTGTTTCTGAAATCGACATTCTAGTATTTGTGAATTATTTAACAACATGTGATTGTTATTGATTTATCAATAAAAtctattataacagcacaaatACAGTAAGCTCAATGTGGGTTAAGAACATGTCTTTTTTATTCTGTTGgaagtattaaattatttaaaacaacttcAGTTTGTGTGCACTTTAGTTCATTTTGTGGCTGTggagtattaaatatttttattgtggtTGTCCAAAGTTGAGAAATAAAtcatatgaataaaa

Function

symbol description
rec8 Predicted to enable chromatin binding activity. Predicted to be involved in nuclear division and replication-born double-strand break repair via sister chromatid exchange. Predicted to act upstream of or within several processes, including gamete generation; homologous chromosome pairing at meiosis; and seminiferous tubule development. Predicted to be located in condensed chromosome, centromeric region and condensed nuclear chromosome. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex.

NR:

description
PREDICTED: meiotic recombination protein REC8 homolog isoform X2

GO: NA

KEGG:

id description
K13054 REC8L; meiotic recombination protein REC8, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303988.1 True 2720 mRNA 0.45 18 28745630 28756644

Neighbor

gene id symbol gene type direction distance location
si:ch73-182a11.2 LOC108268045 coding downstream 8877 28722850 ~ 28736753 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding downstream 33922 28708029 ~ 28711708 (-)
zte38 LOC108267617,LOC108430736 coding downstream 39107 28699669 ~ 28706523 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding downstream 55618 28686556 ~ 28690012 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 60054 28682472 ~ 28685576 (-)
arl14 LOC108267661 coding upstream 5450 28762094 ~ 28763277 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding upstream 6660 28763304 ~ 28785755 (-)
LOC113540190 NA coding upstream 42333 28798977 ~ 28827964 (-)
gipc2 gipc2,LOC108430720 coding upstream 86278 28842922 ~ 28861443 (-)
LOC117597036 NA coding upstream 120929 28877573 ~ 28880202 (-)
LOC117597077 NA non-coding downstream 27675 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 76987 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 273859 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 362170 28343134 ~ 28383460 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 26279 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 75740 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 135372 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 184018 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 229828 28986472 ~ 28988383 (-)
LOC113540437 fam159a other downstream 93205 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 508825 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 509363 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 520027 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 703845 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 30970 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 116934 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 391994 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 807577 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 967944 29724588 ~ 29730857 (-)

Expression


Co-expression Network