LOC113547251 (LOC108267869,LOC108267871)


Basic Information

Item Value
gene id LOC113547251
gene name LOC108267869,LOC108267871
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5931330 ~ 5949680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303996.1
cctttgcagtgtgtgttagtggtagTGTTCATCCTGAGTTTGAGCTCCTCACTGCTCCTTCAGCATGGACCACTCAGCTGCACTGTggacatttctgatttttagcATAACTCTCCTCAGCTTGGGGGTCAGGGCTCTGCCAACAAGCAAAGTAACAGAGTATGATGTAGATGGTGGAAAAGAGGATCTATTTGAGGTCAATCAAGCGGCTGGTCTTGAGCTCTTCGAGGGAGATATTTTATATGATGAGAAACAAGGGAGGAACTCCATAATTGGGGATGAATACTTATGGCCCACCACTGTGCCATACTATTTGGAGGATGATTTGGATATTAATGCTAAAGGCGTTATAATGAAGGCGTTTGAACAGTATCGCCTGAAGACCTGCATTGACTACAAACCCTGGAGCGGAGAAGAGAACTACATCTCTGTGTTTCAAGGCAACGGGTGTTACTCCTATGTGGGGAACCGACACGTGGGAAAGCAGAGCTTATCCATCGGTGCAGGATGCGACCAAACCGCCACCATCGAACACGAGTTCCTTCATGCCCTGGGGTTCTGGCACGAGCAGTCACGTGCCGATCGTGACGACTACGTCACCATCATGTGGGATCGCATCCAGGGAGGCATGGAGCACAATTTCAATAAATATGATGACACGACGTCCAGCTCCCTGAACGTACCCTATGACTATGATTCCATGATGCACTACAGCAAGAACGCCTTCAGTAAAGGCACCGAGCCCACCATCGTCACCAAGATTCCCGCCTTCAGCGACATCATCGGCCAGAGCTTGGAGTTCAGCGACAGCGACCTGCTCAAGCTGAACAGGCTTTATAATTGCACAAGAGCCACAACTTTCCTGGACACCTGTGACTTTGAGCTGGAAAATATATGTGGGATGATCCAAGGTCAGGGTGACAAAGCAGACTGGGAACATGTCACCAAGGCAACTGGTGGACCCGACACAGACTATTCTAACATGGGACGctgtactgGCACAGGCTACTTCATGCACTTCAGCACCATCAGTGGCACCGAAGGGGACACTGCCCTGTTAGAAAGCAGGCTGCTCTACCCTAACCGCAACTATCAGTGTCTACAGTTCTTCTACTATCACAGTGGAAACCCCAATGATAAGCTGGAGATCTGGGTGAGAGAATACAATGAAATCAACCCTAGCGGAACACTACGCATGATCGAGACAATAACTGgaCCGCCTGAGCCGTTATGGCAGCTACACCATGTTAACCTAGACGTCTCCACAAAGTTCCGCGTGGTATTTAAAGGTACAAAGGGTGCTGGAAGCTCCACAGGTGGGCTCTCTTTGGACGACATCAATCTTTCTGAGACTGCCTGCCCAGAACATGTGTGGCGGATCAAGAACTTCAAAAGTATTATGGAAAACACACCCAGGGGCACTGCCATACACAGCCCACGCTTTCAGTCAAAGTATGGCTACACCTTCCAGATGAGCTTGTATCCCAGTGGCACTACGACCTACCCAGAGTATTTGGGAGCCTTTGCCCGTCTGACATCTGGTGATGACATGATTGACAGTAATCTCACTTGGCCCTGCCCATGGATGCAGATTACTATGATGCTAATGGATCAGAATGCAGACATCCGTAAACGCATGTCCAACCAGAGAAGTATCACAACTGACCCCAATGTGAAATTACCAGGATCTACAATGTATTTCTGGGACAACCCACGAAAAGTGGGAGCGCAAGTAACAGATGTGGATGGGACTAAATACTTCAGAGGATCAGGATATGGAACATATGGATACCTGACTCAGGCCAGAGCACTCAGCAGAGACTTTATCAAGGGTGGAGATGCCATCTTCCTCCTCAGCATGGAAGATATATCAAACATGCTTCTTTCTCAGCCCCTCCCTTCGACAACCGTCCCCAACACAACCTTACCCACGACAACCTTACCCACGACAACCTTACCCACGACAACCGTCCCCACGACAACCGTCCCCACGACAACCGTCCGCACGATCCCTACTCATGATCTATGTGCCTCggtaaaatgtgaaaatgatggCGTGTGTGTTATTGACAATGGTGTAAAAGCAGCCTGCAGGTGTGCCGTAGGTAACGACTGGTGGTACCACGGGGACAGGTGTCAGTTCAAGAGTTCGAACCAGGATGGTGTGGTGATGGCGGTCGTGTCCTCGGTTGTGGTCTTTGCCgtcatggtggtggtgatggtggtggtgacgGTAGTGAGTGTGGAGTGTCTGAAGAATAAGTAtaagaagaaaatgaatgacATGGGGGCCGGCATTACCACACGAAATGTCCATGCAAAGTAACAGCACCCTGAATCATTTAATCAGTAGCGGTAGTGGCATTATACACTTATGTATGAATATAACAAGtatattttcatgtcatttcaatctcaagaaaaataaaatgattttcattCGTTTCTGAAA

Function

NR:

description
PREDICTED: meprin A subunit beta-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08606 MEP1B; meprin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303996.1 True 2452 mRNA 0.48 14 5931330 5949680

Neighbor

gene id symbol gene type direction distance location
LOC113547287 LOC108267871,LOC108267869 coding downstream 13370 5904196 ~ 5917960 (-)
LOC113547299 LOC108268057,LOC108440942 coding downstream 193108 5726590 ~ 5738222 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding downstream 237095 5617863 ~ 5694235 (-)
igfbp1b LOC108268024 coding downstream 329063 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 488627 5435223 ~ 5442703 (-)
LOC113547282 LOC108267872 coding upstream 6447 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 22944 5972624 ~ 5986215 (-)
trnak-cuu_3 NA coding upstream 231207 6180887 ~ 6180959 (-)
mylk4a LOC108268043 coding upstream 568783 6518463 ~ 6560326 (-)
LOC113547256 LOC108267788 coding upstream 653120 6602800 ~ 6612842 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding downstream 32315 5897379 ~ 5899015 (-)
G60092 NA non-coding downstream 79984 5785295 ~ 5851346 (-)
G60136 NA non-coding downstream 90856 5838134 ~ 5840474 (-)
G59992 NA non-coding downstream 204896 5725978 ~ 5726434 (-)
G59987 NA non-coding downstream 206569 5724525 ~ 5724761 (-)
G60181 NA non-coding upstream 20215 5969895 ~ 5972613 (-)
G60311 NA non-coding upstream 430018 6379698 ~ 6379897 (-)
G60328 NA non-coding upstream 440023 6389703 ~ 6390077 (-)
G60333 NA non-coding upstream 445185 6394865 ~ 6395071 (-)
trnae-cuc_12 NA non-coding upstream 494064 6443744 ~ 6443815 (-)
cldn1 LOC108268314 other downstream 437291 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 844973 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 986309 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1283450 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1359503 4560788 ~ 4571827 (-)
LOC117597002 LOC107721237 other upstream 931702 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2502930 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2621816 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2689788 8639468 ~ 9528825 (-)
G61478 NA other upstream 3033554 8983234 ~ 8984453 (-)

Expression


Co-expression Network