mus81 (mus81)


Basic Information

Item Value
gene id mus81
gene name mus81
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16299941 ~ 16310157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303998.1
TTgtgcagatctggcaaccctgctgcgTACATTGTTTTCGAAAACACTGGCGCGGAGCTCATGACACACATAACCACTGTACTGGGCAGCTGTAGATATATTACATGTGTATGTCGTGATAAAAAGACATGCTGAGTTTCATATAGTCACGCCGATGTTATTATTCGACTTTACAAAAACACGAACTAAACCGAACAAACGTTGAGAAATAATGTACTGTTACGCTTACATTGTTAGCTACCTCTGGCTAATATTTTGGTAGAAAAGCCGCGGGGATCACCGGCTAACTTCAGCTGTTAGACAATGAGAACAAAACGTTTTATATCAACTAGCTGAAAGTCAGTGTAttccacaaaacaaaacaaaacataaccgtAGTTACAAGCAGACTGATGTTAGGTAACTTGCTTAATCTATGAAGAAACACTTGGTCTGTTATTTACTAGCTAAATTAGCTTGTTTATAACGTTACTGGCACATTTAACGGTACGGTGTTGCATAAATTTGAACGAGCCGGAGTTTTCTGTTGCATGGTTTTAACCGGTTACGTGCTGAACTCGCTGTGTGTCCACATGCCATCGGAAGCAGTGCGTCTGGGTCGGAAGCGGCCTGTGCCCGCCTGCCCCAACCCGCTCTTCCTGCAGTGGCTCACTGAGATGCGCGATCACGCCAAAGAGAAAGGCCTCAAGACCCAGTACGTCTATCAGAAGGctataaattctttaaaaaagtatCCGCTGCCACTGAAAAACGGTAAAGAGGCCAAAATCCTGCAGAACTTTGGGGACGGAATCTGTAAGATCCTGGACGAGAGGCTTGAGAGACATTACCGAGAAAACGgTGCCAATGCTCCTGTCCACTGCCTCCCACGTAGTGCTGAACCCTGCAGCAACAACCTGCCTTCCACCAAACCATCATCACACTTTCCTAACTTTCCTGCTACAAAGGGTGGAAGAAATATGagcaAGGCTGAGGGTGATGCAGGACAGAAGAAGGGAGGAAAGAAGAAGAGGGAGTATGTGCCCCAGAAGAGATCAGGAGCCTATGCTGTTCTTCTTACATTGTACAGACATTCACAGATACCTAGCAGTAAAGgtttcatgtttaaaaatgaactgCAGACTGAGGCGCAGTCCCTCTGTGACAAATCCTTCACTGTACCTGATCTAGGTAGTAAATACACTGCGTGGTCTTCAGTAAGCACCCTCATTCAGAAAAACCTGCTTCTGAAGACACACAACCCTGCCAGGTACTCCTTGACAGAGCTTGGTCTGGCTCTGGCAGAAAGACTGGAGTctggagagagagggggagatgATGGacaagaagaggaggaggagaagagtgAGGCTGAGGACTCAGAGGATGGACCAGTTACCGTAGACCTGACTCAGGATGAAGACAAAGAAGAACATGAAGGTGAAGACAGCTGCATCCCAAGAGATGGGTCTAGAACAGCAGTCTCAGTAACACATGCAGGGAGTGCTGCACCTGACTCTGATCTCTCAGAAAAGTGTCACAGCTCAGAGACAGGGAGAGCCGCATATCTTCTCCCTGGATCCTATGacattgtgttgtgtgttgacTTTATTGAGACCACTGGAGGAAACACGGCACGCAAACAAGAATTGGTCAAGGAGCTACAGAGAAACGGTGTGACCTTTGACATCAGGAAACTAAATGTGGGAGACTTCCTATGGGTTGCTCGTGAGAAAGTAGCACCTGTGCCTGGTCAGTTGCGTCCACCTGTGGCAAAAGAGCTGGTCCTTGATTACATCATTGAGAGGAAGCGGATAGATGATCTGTGTGGAAGTATAATGGATGGGCGTTTCAGAGAACAGAAGttccGTCTGAAGAGGTGTGGTCTGCATAAGCCCATCTACCTGGTGGAGCAGTGTGGTTCAGCAGCAGCACACCTCAGTCTACCAGAGAGCACTTTGCAACAAGCTATAGTTAATACACAGGTGGTAGATAACTTCTTTGTGAAGAGAGTTCAGGATGTTAAGGAATCAGCTGCCTACCTCACAGTCATGACCAGATATCTGCAGAAACTTTATCAGAATCGGACATTGTACTACCGATCTAGAGAATTGGAAGGAGATGGAGAGTGTGACGTGGAGAATGGAGGCAGGGAAAGGGAAAACCCCCGCTGCTCGCTTATCTCTTTCACAGAGTTCAACTATGGAGCTTTGAAAAACAAGTGTCAGACAGTTAGAGAGGTTTTTGCCCGACAGCTGATGCAGATCAGTGGAATCTCTGGTGACAAAGCAGCTGCCATATTGGAGCACTACAGTACAGTAAGCAGTTTATTGAATGCATACAACCAGTGTTTCACtgaggcagagaaagaaaagctcCTCTCATCCATCAAATATGGCAAACTTAAAAGaaATATTGGGCCAGCTCTTAGCCGGACTGTATACCAGCTTTACTGTACAGATGGACCGCTGTCATGACCACACACTGTATTCTTTATCATACTTCATCATACTTCATCAAACTGCAATGCAATGCAGTATGCTGTTTATTCCCTAACCTATTTTAGAGGAAAATATTTGAGTCAAATAAAGATTTACATTTTGTATA

Function

symbol description
mus81 Predicted to enable 3'-flap endonuclease activity. Predicted to be involved in double-strand break repair via break-induced replication; mitotic intra-S DNA damage checkpoint signaling; and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be part of Holliday junction resolvase complex. Predicted to be active in nucleus. Orthologous to human MUS81 (MUS81 structure-specific endonuclease subunit).

NR:

description
crossover junction endonuclease MUS81

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K08991 MUS81; crossover junction endonuclease MUS81

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303998.1 True 2586 mRNA 0.46 16 16299941 16310157

Neighbor

gene id symbol gene type direction distance location
ovol1a LOC108267728,LOC108434587,LOC103038355 coding upstream 1220 16291819 ~ 16298721 (+)
LOC113539958 LOC108434586 coding upstream 15657 16278990 ~ 16284284 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding upstream 22447 16264254 ~ 16277494 (+)
tkfc tkfc coding upstream 35744 16256665 ~ 16264197 (+)
LOC117597006 LOC108267494 coding upstream 95739 16197701 ~ 16204202 (+)
fis1 fis1,LOC108434607 coding downstream 33187 16343344 ~ 16349401 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding downstream 42604 16352761 ~ 16355963 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding downstream 46084 16356241 ~ 16366191 (+)
chd3 chd3,LOC107738011 coding downstream 61840 16371997 ~ 16418930 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding downstream 150434 16460591 ~ 16465228 (+)
G65335 znf638 non-coding upstream 68826 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 236480 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 244796 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 298480 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 429170 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 81972 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 120304 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 121788 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 204480 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 259530 16569687 ~ 16577737 (+)
LOC113540079 sh3tc1 other upstream 259957 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1641005 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2030601 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2580487 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2737675 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 56 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 57799 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1025340 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1299335 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1690001 18000158 ~ 18010962 (+)

Expression


Co-expression Network