nfx1 (nfx1,LOC108268165)


Basic Information

Item Value
gene id nfx1
gene name nfx1,LOC108268165
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22170332 ~ 22184685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304011.1
CCTCTTCTCTGATTGGATAAACGCGACCAGCGAGTGACTTTTAGCCTTGTTTACTGTTAGCCTGCGATATTAAATTCATTCTGGTTTGACAGCAGGTAGAGGAGACGCTACAGAAATATTTAGGGaaagcttttttaaatgttttcgaATGGCTGAAGCCTCGGGGACAGAAAATCCTGATTATGTACCAGGGAGGACCAGCCAGTCAGCGTCCAGAAGAGATCATCCACGGCCAGGCCACAATCGAAAACGGGGAGGTCACGATAGAGCACATGCAAGGTCAGGACACTCAAATCTAGCCAGTCATCCAGAGGAGCAAAATGAATTCTATGACAACgcagctacacacacatcacacaacagCTCATCTAGCAGATGTGAGATAaggggaggaagaggaagaggaagaggagggagaggaagtAGGGGTAATACTGAGCATTGGTCCCAAGGTTCAAGATGGTCAAGGTCTGAAAGTGATAATGGCCCCTCAGTGCAGGATGACGTGTCGAATGTTTGCCAGCAATCCAACACCGCACCTGCCTACAGATTCATAGATGTGGAGAATCAACAAAAAGGTGCCTACGTGGGCGAGCTCCAACATGAACCCAGAGAAACCTGGCCAAGAATGTCCAGAAGAGGCAAAGATTCAAGAAAGCCATTAACCAGACACAAAGAAGCAAATCAGGACAATCGTGCAGCAGATGTAGATTATACAGCCAGTGTAGCGCCCACTGAAGTAGAGCACGAGCACAGGAACAACagaggatggagaggaggaggaaggcaGGGTTACCCTAGGAAGAAAGGGCCTGCCTTACATGCTAGCAGCCAAGggaactggagagagagagagccaccACACATGGACAAAGAGGAGGAGAAACTGAGAGAACACAAGGCCAGAGGAAGCAAAGAGGAGCCTAACTGGAGAGGTGCAAGTGGAAAAGACCAGTGGCGGAGACCCCAAATTCAAGAGCAAGGACAAAGGAGAGGAGGACGTCCTGAGAGGAGGACTGGGCCAGTGAAACGTGTCGAGCCGCCCAAGAACAAAGAGACCCAGACAGgctgCCTCATTGAGCAGCTGACAGAAGAGAAGTATGAGTGCatggtgtgttgtgatgtgatCCGTGTCATGGCGCCTGTTTggagctgtcagagctgcttccATGTCTTCCACCTGAATTGCATCAAGAAGTGGGCTCGCTCCCCTGCCTCACAGGCTGATGAGACTGGCGAAGGCTGGCGTTGTCCTGCTTGCCAAAATGTGGCATTAAAGTTCCCAACATCTTACATCTGTTTCTGTGGGAAGGTGACCAATCCGGAGTATCAGCACAGTGAGATTCCACACAGCTGTGGTGAAATGTGTGGGAAGAAGAGGACTGGAGGAGACTGCAATCACCGCTGCAACATtTTATGTCACCCAGGTCCTTGTCCACAGTGTCCAGCATTTACCACCAAATCCTGTGTTTGTGGAAGAACGAGtaAGCAGGTCCGCTGCAGTCAGACAGGGGCTCTGCGTTGTGACCAGGAGTGTGGAGCTCAGTTAAACTGCAAAGAGCACTACTGTACACAGATTTGCCACCAGGGCCCATGTCAGCCCTGCCATCTCCGTGTCCAGCAAAtgtgttactGCGGGGTGGTGCACCGGGAGGTGGCATGTGGGACTGACTGGGACAGCCTTGACGGATCCGGATATTTCTCCTGCCACAAGCCATGTGGAAAGATGCTGGAATGCCGAGCCCACCGCTGCCAGCAGGTGTGCCACCCAGGCCGGTGCCAGCCATGCCCTCGCTCGCCCATTCTGGTGTGTAGCTGCCCCTGTGGACAGACAGCCTTATCCAAGCTGCTGGAGCTGGGCTATCCAGAGAGACGGCGTTGCACTGACCCTATTCCATCCTGTGGAAAGATCTGCAGCAAGCCACTGCCTTGCGGTGATGTTGACACTATTCATCTGTGTGATAAACTTTGCCATGAGGACAAATGTGGCCCATGCTCTCTCACCTCCACCATTAAGTGCAGATGTGGCAGTAAAACCAAGGAGGTTCCATGTGCTATGATCCACAGTGAAGATGAATTGGTGTTTACTTGTGAGAGACGTTGCAACAAGAAGCGCTCATGTGGCAGGCACAAGTGTGGAGAGATGTGCTGTGTGGACACTGAGCATAAATGCACAATTATCTGTGGCTACAAGCTGAACTGTGGTCTTCACCGGTGTCAGGAGGTGTGTCACCGTGGAAACTGCCAACCCTGCTGGCAAACCAGTTTTGATGAGCTGGCCTGCTACTGTGGTGAAACTGTCATGTTCCCACCGATCCCCTGTGGCACCAAACCACCCGAGTGCAAAAACCCCTGCACACGCCAGCATGACTGTGATCACCCAGTTTTGCACTCCTGCCATAGTGAGGAGAGATGTCCGCCCTGTACCTACCTCACTAAGAAGTGGTGCATGGGCAACCATGAGCAAAGAAGTAATATCCCATGCCACCTGCAGGATATCTCGTGCGGTTTGGTCTGTAATAAAACGTTGTCCTGTGCCTTTCACCGCTGCAAAAGAATATGCCATCGTGGGGAGTGCCAAGCTGAAGGTGACTGTAAGCAGCCTTGCCCTCACCCCAGACCTGAGTGTGGGCACCCCTGTAATGCCCCATGCCACCCTGGTACCCCCTGCCCACACACCACCTGCACTGCCAAGGTGGCGATGCAGTGCGATTGTGGACGCAGGAAGGAGACTGTACCCTGTACAGAGGCAGCCAGCTCCTCCCAGAGATATGCAGCTATTGCTATGGCAAGTAAATTGTCGGATATGCAGTTAGGAGAGTCCGTCAACATTGCTCAGCTCACCAAGAAGGACCAGAAACAGGCCAGGCTGGAATGTGATCAAGAGTGTGCTACACTGGAGAGAAATCGgcGACTTGCGGAGGCACTGCAGGTTGATCCGACAGTTGATCCATTCAACACCAAATCCTCCACATGTAAATACAGCGACTCTCTCAAAGAGGATGCCAGAAAAGACTTCAAGTTTGTCAGTGAGGTGGAGGAGGAAATCAAGAATCTGGTTGAACTAGCAAACAAGGGTAAACAGCCAAAGAGGAGTCACTGTTTCCCACCCATGAAGCGCGATCAGCGGAGAATTGTTCACGAGCTGGCAGAGGTGTACGGCTTAGAGAGCATCAGCTACGATAGTGAACCCAAACGCAACATTGTCATCACAGCCATCAGGGGGAAATCTGCATGCCCTACGTCCACTCTGACTGCGCTGATCGAGAGAGAAACTGCTGCCCGGGCCCCACCACCCATTGCCCATATCAAACAATACAGCAGCAAgggTGATGGTAGCAATGCTTGGCCGAAGCATGCTAAAGAAGAGCCTATTGATTACTTTGACGTTCAGGATTGattaaaactgtgatgtatccACAGTAATGGTCGTTGTTCACGTCAGTGTAATCACATCAAATAAAACTGGGCACTTGAGGA

Function

symbol description
nfx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human NFX1 (nuclear transcription factor, X-box binding 1).

NR:

description
transcriptional repressor NF-X1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12236 NFX1; transcriptional repressor NF-X1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304011.1 True 3480 mRNA 0.51 24 22170332 22184685

Neighbor

gene id symbol gene type direction distance location
plxdc2 plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879 coding upstream 6751 22045016 ~ 22163581 (+)
malrd1 malrd1 coding upstream 134771 21974743 ~ 22035561 (+)
arl8 arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092,LOC107723111 coding upstream 224744 21934492 ~ 21945588 (+)
cacnb2a cacnb2,cacb2 coding upstream 256100 21849641 ~ 21914232 (+)
LOC113540130 slc39a12 coding upstream 326448 21829024 ~ 21843884 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding downstream 6001 22190686 ~ 22239624 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding downstream 75307 22259992 ~ 22268392 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding downstream 87790 22272475 ~ 22317291 (+)
ncf2 ncf2 coding downstream 144583 22329268 ~ 22338376 (+)
LOC117597114 NA coding downstream 178997 22363682 ~ 22364458 (+)
G68687 NA non-coding upstream 252556 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 421013 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 682844 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 853817 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 936074 21234025 ~ 21234258 (+)
G68947 NA non-coding downstream 59903 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 198409 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 208154 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 342643 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 742125 22926810 ~ 22938741 (+)
LOC113540377 NA other upstream 408031 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 530175 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 846365 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1136579 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2015555 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 465125 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1133819 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1843421 24028106 ~ 24106223 (+)
G69971 NA other downstream 1924110 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2674341 24859026 ~ 24871263 (+)

Expression


Co-expression Network