LOC113547265 (LOC108268247,LOC108268075,LOC108267254,LOC108261847)


Basic Information

Item Value
gene id LOC113547265
gene name LOC108268247,LOC108268075,LOC108267254,LOC108261847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5240683 ~ 5252849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304016.1
ATGTAGATTCTCTCACACAGACCTGGCAACTCTGCTCTCACTTCATAGGAAACGGAAATCAAACTAATCTGTATCTGTTCAGTCTGAGGGCGTAGAGCGTGCGGATAAGTTTCataccatttttcttttcttcagacACACCTGTTTTCCACACAGCTTTTACAAGCTGAACCAGGAAGTGTGAGCTGCAGTTAGTGACTGTGTGAGAGTTTGTTTTTAGGTAAAATGGCAGAAGCTAATATTTTAGGACTTCAGGATCATTTCAGCTGTTCAATCTGTTTGGATCTACTCAAGGATCCAGTAGCTCTTCTTTGTGGACACAGTTTCTGTATGATGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAAGGGAGTCTATAGCTGTCCTCAGTGTAGACAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAACACCATGCTGGATGAAGTAGTGGAGACCCTGAAGAAGACAAGACTCCAAGCTACACGTCCTGCTCAAAGTTCAGCTGGACCTGAAGATGTGGAGTGTGATTCCTGCACTGGGAGAAAATCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAAGTGCTGGAGGTTTACTGTCGCACTGACCAGCAGTGTATCTGCATGTTGTGTACCATGGATGAACATAAAGGACATGATACAGTATCAGCTGCAGCAGAAAGAGCTGAGAAACAGAAGCAGTTGATGGGTATACAGGAGAAATCCAAGCAGAGAATccaggacagagagaaggagctTCAGGAACTGTGGAATGCTGTGGAGACTCACAAGCGCTCTGCACAAACAGCAGTGCAGAAAACTCAGAGGATCTTTACTGAACTGATCAAATCCACTGAGAGAAGACGCTCTGAAATGACAGCGCTGATCAGAGCTCAAGAGAAAGCTGCAGTGAGTCGAGCTGAAGGAGCCATGAAGCAACTGGAAAGGGAGATTGCAGACCTGAAGAAGAGAGACGCTCAGTTGGAGgagctttcacacacagaaGATCCCATCCAGTACCTCCAGAGTTTTCAGTCTGTCTCGACCCCAACTGGACCTACAGACTTTCCCACCATCACATTAAGTTCTCTGCTAACTTTTGAAGACGTAACAAAGTCTGTGTTTCAGCTGAAAGAGAAACTAGAAGAGTACTGTAAAGGCGAGTTTGAGAAGATATCAAGTGGAGTGAGAGATGTCCAGATCCTACCACCTCCTCTTCCTGCTCCTGTTTTCACTCTAAAACTCCAAAGCAGAGAAACCTGTCTTCAACAAGACAAATACCCAGCTCTGTCTTTATTCAGGACCTGGCAGAAGTGAGAAACCTGCAGATCAATAACTAGTGTCACTCTTAGTGACACTTGCACTTTACAGCGCTCCTCAGTCTACagtctctctttgtttttgtcatttaatcACAGTTTCTGCTCTCACGTGCATATTGTGGAATAATCTGTGTAATCTTCATAGGAATGAATAAGAATTTAAGGATGTTTATCTTGGATTTGTTGATATACATTGATGAAATGAATACTATATTTTGTGTAAGGCGATAACAAAACCAAAGCAGTTATTTTGTTATAAGTAATGTTTTTCTAGTATTTCACTGTATACAACATTTTTCAAACAGAACAATTAAAGAGCTCTGTATTGGTGTTCATCTGTTGATGAAAATGATTAACCCTTTCATATTAGAAAAAGTCTTACAGTGGATCAGAGATGTTTCCTTAAAGCAAATGTaaaatggaatttgatgtgtGCTGTTCTTTCTGAAGACTATTCTGCACCTATATATTTTTCTCCCCAAAAATTTAAAAGATGTTCTTGTAATAACTGACCTGAAAATTTTAAAGCAGTTGTTTCACCAAAGTGTACTTTGTGTTATTCTGACCCAGAAgcttttattaatgtatttttccaagattaaaaatttttttttgctgatagctttaaatttttttagctttattcATTTAGATGACATAAATAAcagttttgtttgtattgtGATGCAGTTTCATCTGTAATCGGTAGT
>XM_034304017.1
ATGTAGATTCTCTCACACAGACCTGGCAACTCTGCTCTCACTTCATAGGAAACGGAAATCAAACTAATCTGTATCTGTTCAGTCTGAGGGCGTAGAGCGTGCGGATAAGTTTCataccatttttcttttcttcagacACACCTGTTTTCCACACAGCTTTTACAAGCTGAACCAGGAAGTGTGAGCTGCAGTTAGTGACTGTGTGAGAGTTTGTTTTTAGGTAAAATGGCAGAAGCTAATATTTTAGGACTTCAGGATCATTTCAGCTGTTCAATCTGTTTGGATCTACTCAAGGATCCAGTAGCTCTTCTTTGTGGACACAGTTTCTGTATGATGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAAGGGAGTCTATAGCTGTCCTCAGTGTAGACAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAACACCATGCTGGATGAAGTAGTGGAGACCCTGAAGAAGACAAGACTCCAAGCTACACGTCCTGCTCAAAGTTCAGCTGGACCTGAAGATGTGGAGTGTGATTCCTGCACTGGGAGAAAATCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAAGTGCTGGAGGTTTACTGTCGCACTGACCAGCAGTGTATCTGCATGTTGTGTACCATGGATGAACATAAAGGACATGATACAGTATCAGCTGCAGCAGAAAGAGCTGAGAAACAGAAGCAGTTGATGGGTATACAGGAGAAATCCAAGCAGAGAATccaggacagagagaaggagctTCAGGAACTGTGGAATGCTGTGGAGACTCACAAGCGCTCTGCACAAACAGCAGTGCAGAAAACTCAGAGGATCTTTACTGAACTGATCAAATCCACTGAGAGAAGACGCTCTGAAATGACAGCGCTGATCAGAGCTCAAGAGAAAGCTGCAGTGAGTCGAGCTGAAGGAGCCATGAAGCAACTGGAAAGGGAGATTGCAGACCTGAAGAAGAGAGACGCTCAGTTGGAGgagctttcacacacagaaGATCCCATCCAGTACCTCCAGCTGAAAGAGAAACTAGAAGAGTACTGTAAAGGCGAGTTTGAGAAGATATCAAGTGGAGTGAGAGATGTCCAGATCCTACCACCTCCTCTTCCTGCTCCTGTTTTCACTCTAAAACTCCAAAGCAGAGAAACCTGTCTTCAACAAGACAAATACCCAGCTCTGTCTTTATTCAGGACCTGGCAGAAGTGAGAAACCTGCAGATCAATAACTAGTGTCACTCTTAGTGACACTTGCACTTTACAGCGCTCCTCAGTCTACagtctctctttgtttttgtcatttaatcACAGTTTCTGCTCTCACGTGCATATTGTGGAATAATCTGTGTAATCTTCATAGGAATGAATAAGAATTTAAGGATGTTTATCTTGGATTTGTTGATATACATTGATGAAATGAATACTATATTTTGTGTAAGGCGATAACAAAACCAAAGCAGTTATTTTGTTATAAGTAATGTTTTTCTAGTATTTCACTGTATACAACATTTTTCAAACAGAACAATTAAAGAGCTCTGTATTGGTGTTCATCTGTTGATGAAAATGATTAACCCTTTCATATTAGAAAAAGTCTTACAGTGGATCAGAGATGTTTCCTTAAAGCAAATGTaaaatggaatttgatgtgtGCTGTTCTTTCTGAAGACTATTCTGCACCTATATATTTTTCTCCCCAAAAATTTAAAAGATGTTCTTGTAATAACTGACCTGAAAATTTTAAAGCAGTTGTTTCACCAAAGTGTACTTTGTGTTATTCTGACCCAGAAgcttttattaatgtatttttccaagattaaaaatttttttttgctgatagctttaaatttttttagctttattcATTTAGATGACATAAATAAcagttttgtttgtattgtGATGCAGTTTCATCTGTAATCGGTAGT

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304016.1 True 2152 mRNA 0.41 6 5240683 5252849
XM_034304017.1 False 2050 mRNA 0.41 6 5240683 5252849

Neighbor

gene id symbol gene type direction distance location
LOC113547266 NA coding upstream 30922 5195675 ~ 5209761 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding upstream 48938 5191076 ~ 5191745 (+)
LOC113547260 LOC108261847,LOC108267254 coding upstream 62293 5152315 ~ 5178390 (+)
LOC117597179 NA coding upstream 76059 5164066 ~ 5164624 (+)
LOC117597061 LOC108261662 coding upstream 190608 5045128 ~ 5050075 (+)
LOC113547263 LOC108261082 coding downstream 33508 5286357 ~ 5306541 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding downstream 149435 5402284 ~ 5410215 (+)
LOC113547281 LOC108267848 coding downstream 178387 5431236 ~ 5433720 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding downstream 196633 5449482 ~ 5466119 (+)
LOC113547279 tns3,LOC101063620 coding downstream 253852 5506701 ~ 5554666 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 222881 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 282369 4958062 ~ 4958314 (+)
G59479 NA non-coding upstream 288085 4952371 ~ 4952598 (+)
G59478 NA non-coding upstream 290032 4950300 ~ 4950651 (+)
G59329 NA non-coding upstream 541888 4677167 ~ 4698795 (+)
LOC113547270 NA non-coding downstream 11167 5264016 ~ 5266014 (+)
G59663 NA non-coding downstream 49033 5301882 ~ 5369456 (+)
G59725 NA non-coding downstream 176432 5429281 ~ 5429622 (+)
G59712 NA non-coding downstream 184995 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 239352 5492201 ~ 5492461 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 50970 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 225870 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 284216 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 532285 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 587562 4650477 ~ 4653121 (+)
LOC113547289 LOC108267851 other downstream 135519 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 326947 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 890683 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1342277 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1431487 6684336 ~ 6704346 (+)

Expression


Co-expression Network